Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5038 and Pf6N2E2_5039 are separated by 39 nucleotides Pf6N2E2_5039 and Pf6N2E2_5040 are separated by 90 nucleotides Pf6N2E2_5040 and Pf6N2E2_5041 are separated by 174 nucleotides
Pf6N2E2_5038 - ATP-dependent helicase HrpB, at 5,813,357 to 5,815,873
_5038
Pf6N2E2_5039 - endonuclease/exonuclease/phosphatase family protein, at 5,815,913 to 5,816,992
_5039
Pf6N2E2_5040 - FIG00958173: hypothetical protein, at 5,817,083 to 5,817,745
_5040
Pf6N2E2_5041 - Uncharacterized protein conserved in bacteria, at 5,817,920 to 5,818,669
_5041
Position (kb) 5815
5816
5817 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5814.962 kb on + strand, within Pf6N2E2_5038 at 5815.079 kb on + strand, within Pf6N2E2_5038 at 5815.079 kb on + strand, within Pf6N2E2_5038 at 5815.079 kb on + strand, within Pf6N2E2_5038 at 5815.079 kb on + strand, within Pf6N2E2_5038 at 5815.080 kb on - strand, within Pf6N2E2_5038 at 5815.080 kb on - strand, within Pf6N2E2_5038 at 5815.138 kb on + strand, within Pf6N2E2_5038 at 5815.138 kb on + strand, within Pf6N2E2_5038 at 5815.139 kb on - strand, within Pf6N2E2_5038 at 5815.139 kb on - strand, within Pf6N2E2_5038 at 5815.139 kb on - strand, within Pf6N2E2_5038 at 5815.302 kb on + strand, within Pf6N2E2_5038 at 5815.302 kb on + strand, within Pf6N2E2_5038 at 5815.303 kb on - strand, within Pf6N2E2_5038 at 5815.601 kb on + strand, within Pf6N2E2_5038 at 5815.602 kb on - strand, within Pf6N2E2_5038 at 5815.602 kb on - strand, within Pf6N2E2_5038 at 5815.770 kb on - strand at 5815.815 kb on - strand at 5815.867 kb on + strand at 5815.867 kb on + strand at 5815.868 kb on - strand at 5815.975 kb on + strand at 5815.976 kb on - strand at 5815.976 kb on - strand at 5816.022 kb on + strand, within Pf6N2E2_5039 at 5816.022 kb on + strand, within Pf6N2E2_5039 at 5816.023 kb on - strand, within Pf6N2E2_5039 at 5816.032 kb on - strand, within Pf6N2E2_5039 at 5816.032 kb on - strand, within Pf6N2E2_5039 at 5816.041 kb on + strand, within Pf6N2E2_5039 at 5816.139 kb on + strand, within Pf6N2E2_5039 at 5816.139 kb on + strand, within Pf6N2E2_5039 at 5816.140 kb on - strand, within Pf6N2E2_5039 at 5816.228 kb on + strand, within Pf6N2E2_5039 at 5816.229 kb on - strand, within Pf6N2E2_5039 at 5816.278 kb on + strand, within Pf6N2E2_5039 at 5816.279 kb on - strand, within Pf6N2E2_5039 at 5816.394 kb on + strand, within Pf6N2E2_5039 at 5816.394 kb on + strand, within Pf6N2E2_5039 at 5816.394 kb on + strand, within Pf6N2E2_5039 at 5816.394 kb on + strand, within Pf6N2E2_5039 at 5816.394 kb on + strand, within Pf6N2E2_5039 at 5816.394 kb on + strand, within Pf6N2E2_5039 at 5816.394 kb on + strand, within Pf6N2E2_5039 at 5816.395 kb on - strand, within Pf6N2E2_5039 at 5816.395 kb on - strand, within Pf6N2E2_5039 at 5816.395 kb on - strand, within Pf6N2E2_5039 at 5816.790 kb on + strand, within Pf6N2E2_5039 at 5816.791 kb on - strand, within Pf6N2E2_5039 at 5816.922 kb on + strand at 5817.002 kb on + strand at 5817.211 kb on - strand, within Pf6N2E2_5040 at 5817.357 kb on + strand, within Pf6N2E2_5040 at 5817.358 kb on - strand, within Pf6N2E2_5040 at 5817.358 kb on - strand, within Pf6N2E2_5040 at 5817.390 kb on - strand, within Pf6N2E2_5040 at 5817.405 kb on + strand, within Pf6N2E2_5040 at 5817.405 kb on + strand, within Pf6N2E2_5040 at 5817.406 kb on - strand, within Pf6N2E2_5040 at 5817.406 kb on - strand, within Pf6N2E2_5040 at 5817.406 kb on - strand, within Pf6N2E2_5040 at 5817.558 kb on + strand, within Pf6N2E2_5040 at 5817.558 kb on + strand, within Pf6N2E2_5040 at 5817.558 kb on + strand, within Pf6N2E2_5040 at 5817.558 kb on + strand, within Pf6N2E2_5040 at 5817.558 kb on + strand, within Pf6N2E2_5040 at 5817.559 kb on - strand, within Pf6N2E2_5040 at 5817.567 kb on + strand, within Pf6N2E2_5040 at 5817.568 kb on - strand, within Pf6N2E2_5040 at 5817.568 kb on - strand, within Pf6N2E2_5040 at 5817.594 kb on + strand, within Pf6N2E2_5040 at 5817.656 kb on + strand, within Pf6N2E2_5040 at 5817.656 kb on + strand, within Pf6N2E2_5040 at 5817.657 kb on - strand, within Pf6N2E2_5040 at 5817.711 kb on + strand at 5817.712 kb on - strand at 5817.712 kb on - strand at 5817.712 kb on - strand at 5817.812 kb on + strand at 5817.812 kb on + strand at 5817.812 kb on + strand at 5817.812 kb on + strand at 5817.813 kb on - strand at 5817.823 kb on + strand at 5817.824 kb on - strand at 5817.891 kb on + strand at 5817.891 kb on + strand at 5817.892 kb on - strand at 5817.892 kb on - strand at 5817.892 kb on - strand at 5817.892 kb on - strand at 5817.895 kb on + strand at 5817.896 kb on - strand at 5817.896 kb on - strand at 5817.907 kb on + strand at 5817.907 kb on + strand at 5817.907 kb on + strand at 5817.907 kb on + strand at 5817.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 5,814,962 + Pf6N2E2_5038 0.64 +1.0 5,815,079 + Pf6N2E2_5038 0.68 +1.0 5,815,079 + Pf6N2E2_5038 0.68 +0.0 5,815,079 + Pf6N2E2_5038 0.68 +0.0 5,815,079 + Pf6N2E2_5038 0.68 +1.0 5,815,080 - Pf6N2E2_5038 0.68 +1.0 5,815,080 - Pf6N2E2_5038 0.68 -0.6 5,815,138 + Pf6N2E2_5038 0.71 -0.6 5,815,138 + Pf6N2E2_5038 0.71 -0.9 5,815,139 - Pf6N2E2_5038 0.71 -1.3 5,815,139 - Pf6N2E2_5038 0.71 +1.0 5,815,139 - Pf6N2E2_5038 0.71 +0.0 5,815,302 + Pf6N2E2_5038 0.77 +1.0 5,815,302 + Pf6N2E2_5038 0.77 -2.2 5,815,303 - Pf6N2E2_5038 0.77 +1.0 5,815,601 + Pf6N2E2_5038 0.89 -0.6 5,815,602 - Pf6N2E2_5038 0.89 +1.0 5,815,602 - Pf6N2E2_5038 0.89 -2.3 5,815,770 - -0.4 5,815,815 - -0.9 5,815,867 + +1.0 5,815,867 + +0.1 5,815,868 - +1.0 5,815,975 + -0.3 5,815,976 - +0.2 5,815,976 - +1.0 5,816,022 + Pf6N2E2_5039 0.10 +1.0 5,816,022 + Pf6N2E2_5039 0.10 +1.0 5,816,023 - Pf6N2E2_5039 0.10 -0.8 5,816,032 - Pf6N2E2_5039 0.11 -0.3 5,816,032 - Pf6N2E2_5039 0.11 +1.0 5,816,041 + Pf6N2E2_5039 0.12 +1.0 5,816,139 + Pf6N2E2_5039 0.21 +1.0 5,816,139 + Pf6N2E2_5039 0.21 -0.5 5,816,140 - Pf6N2E2_5039 0.21 -0.6 5,816,228 + Pf6N2E2_5039 0.29 +0.0 5,816,229 - Pf6N2E2_5039 0.29 +0.3 5,816,278 + Pf6N2E2_5039 0.34 -1.0 5,816,279 - Pf6N2E2_5039 0.34 +0.0 5,816,394 + Pf6N2E2_5039 0.45 +0.0 5,816,394 + Pf6N2E2_5039 0.45 +1.0 5,816,394 + Pf6N2E2_5039 0.45 +1.0 5,816,394 + Pf6N2E2_5039 0.45 -0.8 5,816,394 + Pf6N2E2_5039 0.45 -0.5 5,816,394 + Pf6N2E2_5039 0.45 +0.0 5,816,394 + Pf6N2E2_5039 0.45 +1.0 5,816,395 - Pf6N2E2_5039 0.45 +0.0 5,816,395 - Pf6N2E2_5039 0.45 +1.0 5,816,395 - Pf6N2E2_5039 0.45 +0.0 5,816,790 + Pf6N2E2_5039 0.81 -0.7 5,816,791 - Pf6N2E2_5039 0.81 -1.3 5,816,922 + +1.0 5,817,002 + -0.9 5,817,211 - Pf6N2E2_5040 0.19 +1.0 5,817,357 + Pf6N2E2_5040 0.41 +1.0 5,817,358 - Pf6N2E2_5040 0.41 +0.0 5,817,358 - Pf6N2E2_5040 0.41 +0.0 5,817,390 - Pf6N2E2_5040 0.46 +1.0 5,817,405 + Pf6N2E2_5040 0.49 -0.9 5,817,405 + Pf6N2E2_5040 0.49 +1.0 5,817,406 - Pf6N2E2_5040 0.49 +0.0 5,817,406 - Pf6N2E2_5040 0.49 -0.6 5,817,406 - Pf6N2E2_5040 0.49 +0.0 5,817,558 + Pf6N2E2_5040 0.72 +0.0 5,817,558 + Pf6N2E2_5040 0.72 +0.0 5,817,558 + Pf6N2E2_5040 0.72 +0.0 5,817,558 + Pf6N2E2_5040 0.72 +1.0 5,817,558 + Pf6N2E2_5040 0.72 +0.6 5,817,559 - Pf6N2E2_5040 0.72 +1.0 5,817,567 + Pf6N2E2_5040 0.73 -1.0 5,817,568 - Pf6N2E2_5040 0.73 +2.0 5,817,568 - Pf6N2E2_5040 0.73 -0.8 5,817,594 + Pf6N2E2_5040 0.77 -1.0 5,817,656 + Pf6N2E2_5040 0.86 +1.0 5,817,656 + Pf6N2E2_5040 0.86 +1.0 5,817,657 - Pf6N2E2_5040 0.87 -1.2 5,817,711 + +1.0 5,817,712 - -1.0 5,817,712 - -0.6 5,817,712 - +1.0 5,817,812 + +1.0 5,817,812 + +0.0 5,817,812 + +1.0 5,817,812 + +2.6 5,817,813 - -0.6 5,817,823 + -0.7 5,817,824 - +0.0 5,817,891 + +0.0 5,817,891 + +1.0 5,817,892 - +1.0 5,817,892 - -1.2 5,817,892 - +1.6 5,817,892 - +1.0 5,817,895 + +0.3 5,817,896 - -0.3 5,817,896 - +1.0 5,817,907 + +1.0 5,817,907 + +1.0 5,817,907 + +1.0 5,817,907 + +0.0 5,817,908 - +1.0
Or see this region's nucleotide sequence