Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_454 and Pf6N2E2_455 are separated by 120 nucleotides Pf6N2E2_455 and Pf6N2E2_456 are separated by 250 nucleotides
Pf6N2E2_454 - Mobile element protein, at 516,862 to 518,130
_454
Pf6N2E2_455 - Permease of the drug/metabolite transporter (DMT) superfamily, at 518,251 to 519,195
_455
Pf6N2E2_456 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) <small>(from data)</small>, at 519,446 to 520,522
_456
Position (kb) 518
519
520 Strain fitness (log2 ratio) -2
-1
0
1 at 518.300 kb on - strand at 518.415 kb on + strand, within Pf6N2E2_455 at 518.416 kb on - strand, within Pf6N2E2_455 at 518.522 kb on - strand, within Pf6N2E2_455 at 518.539 kb on + strand, within Pf6N2E2_455 at 518.539 kb on + strand, within Pf6N2E2_455 at 518.539 kb on + strand, within Pf6N2E2_455 at 518.539 kb on + strand, within Pf6N2E2_455 at 518.539 kb on + strand, within Pf6N2E2_455 at 518.540 kb on - strand, within Pf6N2E2_455 at 518.540 kb on - strand, within Pf6N2E2_455 at 518.551 kb on + strand, within Pf6N2E2_455 at 518.551 kb on + strand, within Pf6N2E2_455 at 518.552 kb on - strand, within Pf6N2E2_455 at 518.552 kb on - strand, within Pf6N2E2_455 at 518.552 kb on - strand, within Pf6N2E2_455 at 518.788 kb on + strand, within Pf6N2E2_455 at 518.788 kb on + strand, within Pf6N2E2_455 at 518.788 kb on + strand, within Pf6N2E2_455 at 518.788 kb on + strand, within Pf6N2E2_455 at 518.789 kb on - strand, within Pf6N2E2_455 at 518.789 kb on - strand, within Pf6N2E2_455 at 518.986 kb on + strand, within Pf6N2E2_455 at 518.987 kb on - strand, within Pf6N2E2_455 at 518.987 kb on - strand, within Pf6N2E2_455 at 518.988 kb on + strand, within Pf6N2E2_455 at 519.245 kb on + strand at 519.247 kb on + strand at 519.247 kb on + strand at 519.248 kb on - strand at 519.310 kb on + strand at 519.310 kb on + strand at 519.310 kb on + strand at 519.310 kb on + strand at 519.310 kb on + strand at 519.330 kb on + strand at 519.330 kb on + strand at 519.419 kb on - strand at 519.456 kb on + strand at 519.456 kb on + strand at 519.456 kb on + strand at 519.457 kb on - strand at 519.650 kb on + strand, within Pf6N2E2_456 at 519.651 kb on - strand, within Pf6N2E2_456 at 519.651 kb on - strand, within Pf6N2E2_456 at 519.857 kb on + strand, within Pf6N2E2_456 at 519.857 kb on + strand, within Pf6N2E2_456 at 519.858 kb on - strand, within Pf6N2E2_456 at 519.858 kb on - strand, within Pf6N2E2_456 at 519.858 kb on - strand, within Pf6N2E2_456 at 519.858 kb on - strand, within Pf6N2E2_456 at 519.858 kb on - strand, within Pf6N2E2_456 at 519.965 kb on + strand, within Pf6N2E2_456 at 519.965 kb on + strand, within Pf6N2E2_456 at 519.980 kb on + strand, within Pf6N2E2_456 at 519.981 kb on - strand, within Pf6N2E2_456 at 520.034 kb on + strand, within Pf6N2E2_456 at 520.034 kb on + strand, within Pf6N2E2_456 at 520.035 kb on - strand, within Pf6N2E2_456
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 518,300 - -0.6 518,415 + Pf6N2E2_455 0.17 +0.9 518,416 - Pf6N2E2_455 0.17 -0.1 518,522 - Pf6N2E2_455 0.29 +0.9 518,539 + Pf6N2E2_455 0.30 -0.1 518,539 + Pf6N2E2_455 0.30 -0.1 518,539 + Pf6N2E2_455 0.30 -0.1 518,539 + Pf6N2E2_455 0.30 -0.1 518,539 + Pf6N2E2_455 0.30 -0.7 518,540 - Pf6N2E2_455 0.31 -0.1 518,540 - Pf6N2E2_455 0.31 +0.9 518,551 + Pf6N2E2_455 0.32 -1.1 518,551 + Pf6N2E2_455 0.32 -0.1 518,552 - Pf6N2E2_455 0.32 -0.1 518,552 - Pf6N2E2_455 0.32 -1.9 518,552 - Pf6N2E2_455 0.32 -0.2 518,788 + Pf6N2E2_455 0.57 -0.1 518,788 + Pf6N2E2_455 0.57 +0.9 518,788 + Pf6N2E2_455 0.57 -1.1 518,788 + Pf6N2E2_455 0.57 +0.9 518,789 - Pf6N2E2_455 0.57 +0.9 518,789 - Pf6N2E2_455 0.57 +0.9 518,986 + Pf6N2E2_455 0.78 +0.9 518,987 - Pf6N2E2_455 0.78 -0.7 518,987 - Pf6N2E2_455 0.78 +0.9 518,988 + Pf6N2E2_455 0.78 +0.9 519,245 + -1.5 519,247 + -0.1 519,247 + +0.9 519,248 - +0.9 519,310 + +0.9 519,310 + -0.5 519,310 + -0.1 519,310 + +0.9 519,310 + +0.1 519,330 + -0.1 519,330 + -1.1 519,419 - +0.9 519,456 + +0.9 519,456 + +0.9 519,456 + -1.9 519,457 - +0.9 519,650 + Pf6N2E2_456 0.19 +0.9 519,651 - Pf6N2E2_456 0.19 +0.9 519,651 - Pf6N2E2_456 0.19 +0.9 519,857 + Pf6N2E2_456 0.38 -0.9 519,857 + Pf6N2E2_456 0.38 +0.9 519,858 - Pf6N2E2_456 0.38 +0.9 519,858 - Pf6N2E2_456 0.38 -0.9 519,858 - Pf6N2E2_456 0.38 +0.9 519,858 - Pf6N2E2_456 0.38 +0.9 519,858 - Pf6N2E2_456 0.38 -0.1 519,965 + Pf6N2E2_456 0.48 +0.9 519,965 + Pf6N2E2_456 0.48 +0.9 519,980 + Pf6N2E2_456 0.50 -0.1 519,981 - Pf6N2E2_456 0.50 +0.9 520,034 + Pf6N2E2_456 0.55 +0.9 520,034 + Pf6N2E2_456 0.55 -0.7 520,035 - Pf6N2E2_456 0.55 +0.9
Or see this region's nucleotide sequence