Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_320 and Pf6N2E2_321 are separated by 81 nucleotides Pf6N2E2_321 and Pf6N2E2_322 are separated by 234 nucleotides
Pf6N2E2_320 - TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1, at 387,128 to 389,155
_320
Pf6N2E2_321 - TRAP transporter solute receptor, unknown substrate 1, at 389,237 to 390,187
_321
Pf6N2E2_322 - Transcriptional regulator, LacI family, at 390,422 to 391,420
_322
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1 at 388.613 kb on - strand, within Pf6N2E2_320 at 388.613 kb on - strand, within Pf6N2E2_320 at 388.613 kb on - strand, within Pf6N2E2_320 at 388.613 kb on - strand, within Pf6N2E2_320 at 388.614 kb on + strand, within Pf6N2E2_320 at 388.615 kb on - strand, within Pf6N2E2_320 at 388.615 kb on - strand, within Pf6N2E2_320 at 388.629 kb on + strand, within Pf6N2E2_320 at 388.629 kb on + strand, within Pf6N2E2_320 at 388.630 kb on - strand, within Pf6N2E2_320 at 388.644 kb on + strand, within Pf6N2E2_320 at 388.726 kb on - strand, within Pf6N2E2_320 at 388.743 kb on + strand, within Pf6N2E2_320 at 388.899 kb on + strand, within Pf6N2E2_320 at 389.015 kb on + strand at 389.015 kb on + strand at 389.015 kb on + strand at 389.015 kb on + strand at 389.016 kb on - strand at 389.016 kb on - strand at 389.016 kb on - strand at 389.238 kb on + strand at 389.238 kb on + strand at 389.239 kb on - strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.260 kb on - strand at 389.260 kb on - strand at 389.475 kb on + strand, within Pf6N2E2_321 at 389.475 kb on + strand, within Pf6N2E2_321 at 389.475 kb on + strand, within Pf6N2E2_321 at 389.475 kb on + strand, within Pf6N2E2_321 at 389.476 kb on - strand, within Pf6N2E2_321 at 389.476 kb on - strand, within Pf6N2E2_321 at 389.476 kb on - strand, within Pf6N2E2_321 at 389.479 kb on + strand, within Pf6N2E2_321 at 389.480 kb on - strand, within Pf6N2E2_321 at 389.549 kb on + strand, within Pf6N2E2_321 at 389.549 kb on + strand, within Pf6N2E2_321 at 389.550 kb on - strand, within Pf6N2E2_321 at 389.550 kb on - strand, within Pf6N2E2_321 at 389.550 kb on - strand, within Pf6N2E2_321 at 389.550 kb on - strand, within Pf6N2E2_321 at 389.550 kb on - strand, within Pf6N2E2_321 at 389.550 kb on - strand, within Pf6N2E2_321 at 389.553 kb on + strand, within Pf6N2E2_321 at 389.553 kb on + strand, within Pf6N2E2_321 at 389.553 kb on + strand, within Pf6N2E2_321 at 389.553 kb on + strand, within Pf6N2E2_321 at 389.553 kb on + strand, within Pf6N2E2_321 at 389.554 kb on - strand, within Pf6N2E2_321 at 389.554 kb on - strand, within Pf6N2E2_321 at 389.554 kb on - strand, within Pf6N2E2_321 at 389.673 kb on + strand, within Pf6N2E2_321 at 389.673 kb on + strand, within Pf6N2E2_321 at 389.694 kb on + strand, within Pf6N2E2_321 at 389.695 kb on - strand, within Pf6N2E2_321 at 389.832 kb on + strand, within Pf6N2E2_321 at 389.832 kb on + strand, within Pf6N2E2_321 at 390.036 kb on + strand, within Pf6N2E2_321 at 390.036 kb on + strand, within Pf6N2E2_321 at 390.037 kb on - strand, within Pf6N2E2_321 at 390.037 kb on - strand, within Pf6N2E2_321 at 390.105 kb on + strand at 390.105 kb on + strand at 390.106 kb on - strand at 390.106 kb on - strand at 390.208 kb on - strand at 390.214 kb on + strand at 390.214 kb on + strand at 390.215 kb on - strand at 390.215 kb on - strand at 390.215 kb on - strand at 390.234 kb on + strand at 390.234 kb on + strand at 390.235 kb on - strand at 390.235 kb on - strand at 390.235 kb on - strand at 390.235 kb on - strand at 390.235 kb on - strand at 390.423 kb on + strand at 390.423 kb on + strand at 390.423 kb on + strand at 390.440 kb on - strand at 390.626 kb on - strand, within Pf6N2E2_322 at 391.086 kb on + strand, within Pf6N2E2_322 at 391.086 kb on + strand, within Pf6N2E2_322
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 388,613 - Pf6N2E2_320 0.73 +0.9 388,613 - Pf6N2E2_320 0.73 -0.1 388,613 - Pf6N2E2_320 0.73 +0.9 388,613 - Pf6N2E2_320 0.73 +0.9 388,614 + Pf6N2E2_320 0.73 +0.9 388,615 - Pf6N2E2_320 0.73 -0.8 388,615 - Pf6N2E2_320 0.73 -0.1 388,629 + Pf6N2E2_320 0.74 +0.9 388,629 + Pf6N2E2_320 0.74 +0.9 388,630 - Pf6N2E2_320 0.74 +0.9 388,644 + Pf6N2E2_320 0.75 +0.9 388,726 - Pf6N2E2_320 0.79 -1.1 388,743 + Pf6N2E2_320 0.80 -0.1 388,899 + Pf6N2E2_320 0.87 +0.9 389,015 + +0.9 389,015 + +0.9 389,015 + +0.9 389,015 + +0.9 389,016 - +0.9 389,016 - +0.9 389,016 - -0.9 389,238 + +0.9 389,238 + +0.9 389,239 - -0.7 389,259 + -0.1 389,259 + -0.1 389,260 - +0.9 389,260 - +0.9 389,475 + Pf6N2E2_321 0.25 +0.9 389,475 + Pf6N2E2_321 0.25 -2.4 389,475 + Pf6N2E2_321 0.25 -0.1 389,475 + Pf6N2E2_321 0.25 -0.1 389,476 - Pf6N2E2_321 0.25 -1.3 389,476 - Pf6N2E2_321 0.25 -0.1 389,476 - Pf6N2E2_321 0.25 +0.9 389,479 + Pf6N2E2_321 0.25 +0.9 389,480 - Pf6N2E2_321 0.26 -1.1 389,549 + Pf6N2E2_321 0.33 -0.1 389,549 + Pf6N2E2_321 0.33 -0.1 389,550 - Pf6N2E2_321 0.33 +0.9 389,550 - Pf6N2E2_321 0.33 +0.9 389,550 - Pf6N2E2_321 0.33 -0.1 389,550 - Pf6N2E2_321 0.33 -1.2 389,550 - Pf6N2E2_321 0.33 -1.4 389,550 - Pf6N2E2_321 0.33 +0.9 389,553 + Pf6N2E2_321 0.33 +0.9 389,553 + Pf6N2E2_321 0.33 +0.9 389,553 + Pf6N2E2_321 0.33 -0.1 389,553 + Pf6N2E2_321 0.33 +0.9 389,553 + Pf6N2E2_321 0.33 +0.9 389,554 - Pf6N2E2_321 0.33 -0.1 389,554 - Pf6N2E2_321 0.33 +0.9 389,554 - Pf6N2E2_321 0.33 -1.7 389,673 + Pf6N2E2_321 0.46 -0.3 389,673 + Pf6N2E2_321 0.46 +0.9 389,694 + Pf6N2E2_321 0.48 +0.9 389,695 - Pf6N2E2_321 0.48 +0.9 389,832 + Pf6N2E2_321 0.63 +0.9 389,832 + Pf6N2E2_321 0.63 +0.9 390,036 + Pf6N2E2_321 0.84 -0.4 390,036 + Pf6N2E2_321 0.84 +0.9 390,037 - Pf6N2E2_321 0.84 -0.1 390,037 - Pf6N2E2_321 0.84 +0.9 390,105 + +0.9 390,105 + +0.9 390,106 - -0.7 390,106 - +0.9 390,208 - -0.1 390,214 + -0.7 390,214 + -0.1 390,215 - -0.1 390,215 - -0.8 390,215 - -0.1 390,234 + +0.3 390,234 + -0.7 390,235 - +0.9 390,235 - -1.1 390,235 - +0.9 390,235 - +0.9 390,235 - +0.9 390,423 + -0.1 390,423 + -0.1 390,423 + -0.1 390,440 - +0.9 390,626 - Pf6N2E2_322 0.20 +0.9 391,086 + Pf6N2E2_322 0.66 +0.9 391,086 + Pf6N2E2_322 0.66 -0.7
Or see this region's nucleotide sequence