Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_317 and Pf6N2E2_318 are separated by 96 nucleotides Pf6N2E2_318 and Pf6N2E2_319 are separated by 206 nucleotides Pf6N2E2_319 and Pf6N2E2_320 overlap by 4 nucleotides
Pf6N2E2_317 - Signal transduction histidine kinase, at 384,220 to 385,350
_317
Pf6N2E2_318 - Gluconolactonase (EC 3.1.1.17), at 385,447 to 386,538
_318
Pf6N2E2_319 - DUF1850 domain-containing protein, at 386,745 to 387,131
_319
Pf6N2E2_320 - TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1, at 387,128 to 389,155
_320
Position (kb) 385
386
387 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.540 kb on + strand, within Pf6N2E2_317 at 384.540 kb on + strand, within Pf6N2E2_317 at 384.540 kb on + strand, within Pf6N2E2_317 at 384.540 kb on + strand, within Pf6N2E2_317 at 384.541 kb on - strand, within Pf6N2E2_317 at 384.646 kb on + strand, within Pf6N2E2_317 at 384.675 kb on + strand, within Pf6N2E2_317 at 384.676 kb on - strand, within Pf6N2E2_317 at 384.799 kb on + strand, within Pf6N2E2_317 at 384.799 kb on + strand, within Pf6N2E2_317 at 384.921 kb on + strand, within Pf6N2E2_317 at 384.922 kb on - strand, within Pf6N2E2_317 at 384.922 kb on - strand, within Pf6N2E2_317 at 384.922 kb on - strand, within Pf6N2E2_317 at 384.943 kb on + strand, within Pf6N2E2_317 at 384.943 kb on + strand, within Pf6N2E2_317 at 385.022 kb on + strand, within Pf6N2E2_317 at 385.176 kb on + strand, within Pf6N2E2_317 at 385.176 kb on + strand, within Pf6N2E2_317 at 385.176 kb on + strand, within Pf6N2E2_317 at 385.210 kb on + strand, within Pf6N2E2_317 at 385.210 kb on + strand, within Pf6N2E2_317 at 385.262 kb on + strand at 385.329 kb on + strand at 385.404 kb on - strand at 385.427 kb on + strand at 385.428 kb on - strand at 385.428 kb on - strand at 385.428 kb on - strand at 385.605 kb on + strand, within Pf6N2E2_318 at 385.911 kb on + strand, within Pf6N2E2_318 at 386.030 kb on - strand, within Pf6N2E2_318 at 386.071 kb on + strand, within Pf6N2E2_318 at 386.167 kb on + strand, within Pf6N2E2_318 at 386.167 kb on + strand, within Pf6N2E2_318 at 386.168 kb on - strand, within Pf6N2E2_318 at 386.497 kb on + strand at 386.497 kb on + strand at 386.497 kb on + strand at 386.498 kb on - strand at 386.498 kb on - strand at 386.498 kb on - strand at 386.605 kb on - strand at 386.614 kb on - strand at 386.841 kb on + strand, within Pf6N2E2_319 at 386.842 kb on - strand, within Pf6N2E2_319 at 386.842 kb on - strand, within Pf6N2E2_319 at 386.912 kb on - strand, within Pf6N2E2_319 at 387.351 kb on + strand, within Pf6N2E2_320 at 387.352 kb on - strand, within Pf6N2E2_320 at 387.400 kb on - strand, within Pf6N2E2_320 at 387.400 kb on - strand, within Pf6N2E2_320 at 387.400 kb on - strand, within Pf6N2E2_320
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 384,540 + Pf6N2E2_317 0.28 -0.7 384,540 + Pf6N2E2_317 0.28 +0.9 384,540 + Pf6N2E2_317 0.28 +0.9 384,540 + Pf6N2E2_317 0.28 -0.9 384,541 - Pf6N2E2_317 0.28 +0.9 384,646 + Pf6N2E2_317 0.38 -0.2 384,675 + Pf6N2E2_317 0.40 +0.3 384,676 - Pf6N2E2_317 0.40 +1.9 384,799 + Pf6N2E2_317 0.51 +0.9 384,799 + Pf6N2E2_317 0.51 -0.1 384,921 + Pf6N2E2_317 0.62 -0.1 384,922 - Pf6N2E2_317 0.62 +0.9 384,922 - Pf6N2E2_317 0.62 +0.9 384,922 - Pf6N2E2_317 0.62 +0.9 384,943 + Pf6N2E2_317 0.64 +0.9 384,943 + Pf6N2E2_317 0.64 +0.9 385,022 + Pf6N2E2_317 0.71 +0.3 385,176 + Pf6N2E2_317 0.85 +0.9 385,176 + Pf6N2E2_317 0.85 -0.7 385,176 + Pf6N2E2_317 0.85 +0.9 385,210 + Pf6N2E2_317 0.88 +0.9 385,210 + Pf6N2E2_317 0.88 -1.1 385,262 + +0.9 385,329 + -0.7 385,404 - +0.9 385,427 + -0.9 385,428 - -2.0 385,428 - -0.1 385,428 - +1.5 385,605 + Pf6N2E2_318 0.14 -1.7 385,911 + Pf6N2E2_318 0.42 +0.9 386,030 - Pf6N2E2_318 0.53 +0.9 386,071 + Pf6N2E2_318 0.57 -0.1 386,167 + Pf6N2E2_318 0.66 +0.9 386,167 + Pf6N2E2_318 0.66 -0.1 386,168 - Pf6N2E2_318 0.66 -0.7 386,497 + -0.1 386,497 + -0.6 386,497 + -0.3 386,498 - +0.6 386,498 - +0.9 386,498 - -0.7 386,605 - +0.9 386,614 - +0.9 386,841 + Pf6N2E2_319 0.25 -0.4 386,842 - Pf6N2E2_319 0.25 +0.9 386,842 - Pf6N2E2_319 0.25 -0.1 386,912 - Pf6N2E2_319 0.43 -0.6 387,351 + Pf6N2E2_320 0.11 +0.9 387,352 - Pf6N2E2_320 0.11 +0.9 387,400 - Pf6N2E2_320 0.13 +0.9 387,400 - Pf6N2E2_320 0.13 -0.9 387,400 - Pf6N2E2_320 0.13 +0.9
Or see this region's nucleotide sequence