Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2783

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
3,272,451	-		Pf6N2E2_2782	0.57	-1.0
3,272,481	-		Pf6N2E2_2782	0.58	-0.1
3,272,481	-		Pf6N2E2_2782	0.58	+0.9
3,272,559	-		Pf6N2E2_2782	0.63	-0.6
3,272,641	+		Pf6N2E2_2782	0.67	-0.1
3,272,641	+		Pf6N2E2_2782	0.67	-1.5
3,272,641	+		Pf6N2E2_2782	0.67	+0.9
3,272,641	+		Pf6N2E2_2782	0.67	-0.1
3,272,642	-		Pf6N2E2_2782	0.67	-0.1
3,272,642	-		Pf6N2E2_2782	0.67	+0.9
3,272,642	-		Pf6N2E2_2782	0.67	+0.9
3,272,642	-		Pf6N2E2_2782	0.67	-1.2
3,272,642	-		Pf6N2E2_2782	0.67	-0.1
3,272,669	-		Pf6N2E2_2782	0.69	+0.9
3,272,755	+		Pf6N2E2_2782	0.74	-0.1
3,272,755	+		Pf6N2E2_2782	0.74	-0.5
3,272,755	+		Pf6N2E2_2782	0.74	+0.9
3,272,756	-		Pf6N2E2_2782	0.74	-0.1
3,272,756	-		Pf6N2E2_2782	0.74	-0.1
3,272,945	-		Pf6N2E2_2782	0.84	-0.6
3,273,151	+				+0.9
3,273,151	+				-1.1
3,273,152	-				-0.6
3,273,202	+				-0.5
3,273,202	+				-0.1
3,273,202	+				+0.9
3,273,203	-				-1.1
3,273,203	-				-1.1
3,273,206	+				-0.9
3,273,206	+				+0.9
3,273,206	+				-0.8
3,273,206	+				+0.9
3,273,206	+				-0.6
3,273,206	+				-0.7
3,273,207	-				+0.9
3,273,207	-				+0.9
3,273,207	-				-0.9
3,273,207	-				-0.9
3,273,207	-				-0.1
3,273,207	-				-0.1
3,273,210	+				+0.9
3,273,210	+				+0.9
3,273,210	+				-0.3
3,273,211	-				+0.9
3,273,220	+				+0.6
3,273,220	+				-0.1
3,273,220	+				-0.1
3,273,220	+				-0.7
3,273,221	-				+0.9
3,273,247	+				+0.9
3,273,291	+				-0.1
3,273,291	+				-0.1
3,273,291	+				-0.5
3,273,291	+				+0.9
3,273,292	-				-0.1
3,273,309	-				+0.9
3,273,309	-				-0.6
3,273,338	+				+0.9
3,273,460	-				-2.3
3,273,460	-				+0.9
3,273,460	-				+0.9
3,273,534	+		Pf6N2E2_2783	0.13	+0.9
3,273,535	-		Pf6N2E2_2783	0.13	+0.9
3,273,537	+		Pf6N2E2_2783	0.13	-0.1
3,273,537	+		Pf6N2E2_2783	0.13	+0.9
3,273,582	+		Pf6N2E2_2783	0.19	+0.9
3,273,582	+		Pf6N2E2_2783	0.19	-1.1
3,273,582	+		Pf6N2E2_2783	0.19	+0.9
3,273,583	-		Pf6N2E2_2783	0.19	-1.1
3,273,583	-		Pf6N2E2_2783	0.19	-1.4
3,273,583	-		Pf6N2E2_2783	0.19	+0.9
3,273,583	-		Pf6N2E2_2783	0.19	-2.5
3,273,604	+		Pf6N2E2_2783	0.22	+0.9
3,273,604	+		Pf6N2E2_2783	0.22	-0.6
3,273,605	-		Pf6N2E2_2783	0.22	+0.9
3,273,605	-		Pf6N2E2_2783	0.22	+0.9
3,273,654	+		Pf6N2E2_2783	0.29	-0.1
3,273,655	-		Pf6N2E2_2783	0.29	-0.7
3,273,655	-		Pf6N2E2_2783	0.29	-0.1
3,273,655	-		Pf6N2E2_2783	0.29	+0.9
3,274,011	+		Pf6N2E2_2783	0.77	-1.4
3,274,011	+		Pf6N2E2_2783	0.77	+0.9
3,274,012	-		Pf6N2E2_2783	0.77	-0.6
3,274,012	-		Pf6N2E2_2783	0.77	-2.5
3,274,176	+				-0.1
3,274,177	-				+0.9
3,274,177	-				+0.9
3,274,183	-				-0.1
3,274,268	-		Pf6N2E2_2784	0.42	+0.9
3,274,454	+				+0.9
3,274,614	+		Pf6N2E2_2785	0.26	-0.1
3,274,615	-		Pf6N2E2_2785	0.27	-0.6
3,274,615	-		Pf6N2E2_2785	0.27	-1.6
3,274,824	+		Pf6N2E2_2785	0.57	-0.1
3,274,824	+		Pf6N2E2_2785	0.57	+0.9
3,274,824	+		Pf6N2E2_2785	0.57	-2.9
3,274,825	-		Pf6N2E2_2785	0.57	+0.9
3,274,825	-		Pf6N2E2_2785	0.57	-0.6
3,274,825	-		Pf6N2E2_2785	0.57	-0.2
3,274,825	-		Pf6N2E2_2785	0.57	-0.6
3,274,825	-		Pf6N2E2_2785	0.57	-0.1
3,274,828	-		Pf6N2E2_2785	0.57	+0.9
3,274,828	-		Pf6N2E2_2785	0.57	-0.3
3,274,887	+		Pf6N2E2_2785	0.66	-0.1
3,274,887	+		Pf6N2E2_2785	0.66	+0.9
3,274,888	-		Pf6N2E2_2785	0.66	-0.1
3,274,888	-		Pf6N2E2_2785	0.66	-0.1
3,274,888	-		Pf6N2E2_2785	0.66	+0.9
3,274,888	-		Pf6N2E2_2785	0.66	-0.1
3,274,978	-		Pf6N2E2_2785	0.79	-0.6
3,275,168	+				+0.9
3,275,169	-				-1.0
3,275,169	-				-1.1