Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2602

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
3,058,482	+		Pf6N2E2_2600	0.67	+0.9
3,058,482	+		Pf6N2E2_2600	0.67	-1.4
3,058,483	-		Pf6N2E2_2600	0.67	-1.5
3,058,508	-		Pf6N2E2_2600	0.68	+0.9
3,058,508	-		Pf6N2E2_2600	0.68	-0.1
3,058,528	-		Pf6N2E2_2600	0.70	+0.9
3,058,539	-		Pf6N2E2_2600	0.71	-1.8
3,058,545	+		Pf6N2E2_2600	0.71	-1.0
3,058,545	+		Pf6N2E2_2600	0.71	-1.8
3,058,580	-		Pf6N2E2_2600	0.74	+0.9
3,058,658	+		Pf6N2E2_2600	0.79	+0.9
3,058,658	+		Pf6N2E2_2600	0.79	-0.6
3,058,658	+		Pf6N2E2_2600	0.79	-0.1
3,058,658	+		Pf6N2E2_2600	0.79	-0.5
3,058,659	-		Pf6N2E2_2600	0.79	-1.9
3,058,734	+		Pf6N2E2_2600	0.84	-2.2
3,058,821	+				+0.9
3,058,822	-				-1.9
3,058,903	-				+0.9
3,058,928	-				+0.9
3,058,942	+				-0.7
3,059,000	-				+0.9
3,059,000	-				-0.7
3,059,000	-				+0.9
3,059,019	-				+0.9
3,059,019	-				-0.8
3,059,019	-				-0.9
3,059,087	-		Pf6N2E2_2601	0.12	-1.1
3,059,159	-		Pf6N2E2_2601	0.31	+0.9
3,059,165	+		Pf6N2E2_2601	0.33	-0.2
3,059,165	+				+0.9
3,059,166	-		Pf6N2E2_2601	0.33	+0.9
3,059,166	-		Pf6N2E2_2601	0.33	-0.1
3,059,166	-		Pf6N2E2_2601	0.33	-0.1
3,059,188	+		Pf6N2E2_2601	0.39	-1.4
3,059,188	+		Pf6N2E2_2601	0.39	+0.9
3,059,189	-		Pf6N2E2_2601	0.40	+0.9
3,059,189	-		Pf6N2E2_2601	0.40	-0.6
3,059,189	-		Pf6N2E2_2601	0.40	-0.1
3,059,304	-		Pf6N2E2_2601	0.70	-0.1
3,059,304	-		Pf6N2E2_2601	0.70	+0.9
3,059,304	-		Pf6N2E2_2601	0.70	-0.1
3,059,402	-				-1.1
3,059,443	-				-2.4
3,059,478	+				+0.9
3,059,478	+				-1.1
3,059,479	-				-0.1
3,059,479	-				-0.1
3,059,479	-				+0.9
3,059,479	-				+0.9
3,059,479	-				-0.9
3,059,479	-				-0.1
3,059,481	+				-1.1
3,059,481	+				-1.0
3,059,482	-				-1.7
3,059,482	-				-0.9
3,059,482	-				+0.9
3,059,498	+				+0.9
3,059,498	+				+1.5
3,059,499	-				-1.5
3,059,606	+		Pf6N2E2_2602	0.15	-0.1
3,059,607	-		Pf6N2E2_2602	0.15	-1.8
3,059,607	-		Pf6N2E2_2602	0.15	-0.1
3,059,607	-		Pf6N2E2_2602	0.15	-1.2
3,059,666	-		Pf6N2E2_2602	0.22	-0.1
3,059,666	-		Pf6N2E2_2602	0.22	+0.9
3,059,899	+		Pf6N2E2_2602	0.49	-0.5
3,059,900	-		Pf6N2E2_2602	0.49	-0.1
3,059,900	-		Pf6N2E2_2602	0.49	-3.2
3,059,900	-		Pf6N2E2_2602	0.49	-2.4
3,059,900	-		Pf6N2E2_2602	0.49	-1.1
3,059,900	-		Pf6N2E2_2602	0.49	-2.4
3,059,900	-		Pf6N2E2_2602	0.49	-0.1
3,060,059	-		Pf6N2E2_2602	0.68	+0.9
3,060,059	-		Pf6N2E2_2602	0.68	-1.1
3,060,059	-		Pf6N2E2_2602	0.68	+0.9
3,060,118	+		Pf6N2E2_2602	0.75	-0.1
3,060,118	+		Pf6N2E2_2602	0.75	-0.7
3,060,119	-		Pf6N2E2_2602	0.75	-1.4
3,060,119	-		Pf6N2E2_2602	0.75	+0.9
3,060,119	-		Pf6N2E2_2602	0.75	-0.7
3,060,172	+		Pf6N2E2_2602	0.81	-0.1
3,060,173	-		Pf6N2E2_2602	0.81	+0.9
3,060,317	+				+0.9
3,060,323	+				-0.7
3,060,393	+				-0.7
3,060,394	-				-0.1
3,060,407	-				-1.5
3,060,409	+				-0.1
3,060,409	+				-1.1
3,060,409	+				-1.4
3,060,410	-				+0.9
3,060,410	-				-1.2
3,060,410	-				+0.9
3,060,413	+				+0.9
3,060,414	-				+0.9
3,060,414	-				-3.9
3,060,437	+				+0.9
3,060,437	+				+0.9
3,060,505	-				-0.1
3,060,622	-		Pf6N2E2_2603	0.22	-0.7
3,060,622	-		Pf6N2E2_2603	0.22	-0.6
3,060,622	-		Pf6N2E2_2603	0.22	-0.8
3,060,631	-		Pf6N2E2_2603	0.27	+0.9
3,060,671	+		Pf6N2E2_2603	0.49	+0.9
3,060,671	+		Pf6N2E2_2603	0.49	-0.1
3,060,672	-		Pf6N2E2_2603	0.50	-0.1
3,060,672	-		Pf6N2E2_2603	0.50	-0.1
3,060,672	-		Pf6N2E2_2603	0.50	-0.9
3,060,672	-		Pf6N2E2_2603	0.50	+1.2
3,060,672	-		Pf6N2E2_2603	0.50	-0.1
3,060,686	+		Pf6N2E2_2603	0.57	-0.1
3,060,686	+		Pf6N2E2_2603	0.57	+0.9
3,060,687	-		Pf6N2E2_2603	0.58	-1.1
3,060,687	-		Pf6N2E2_2603	0.58	-0.1
3,060,687	-		Pf6N2E2_2603	0.58	-1.1
3,060,687	-		Pf6N2E2_2603	0.58	+0.9
3,060,687	-		Pf6N2E2_2603	0.58	-0.1
3,060,858	-				-0.1
3,060,858	-				+0.9
3,060,962	+				+0.9
3,060,962	+				-0.7
3,060,963	-				-0.7
3,061,174	+		Pf6N2E2_2604	0.25	-0.4
3,061,174	+		Pf6N2E2_2604	0.25	-0.7
3,061,175	-		Pf6N2E2_2604	0.25	-0.1
3,061,175	-		Pf6N2E2_2604	0.25	+0.9
3,061,217	+		Pf6N2E2_2604	0.29	-0.7
3,061,217	+		Pf6N2E2_2604	0.29	-0.6
3,061,218	-		Pf6N2E2_2604	0.29	+0.9
3,061,218	-		Pf6N2E2_2604	0.29	-1.1
3,061,218	-		Pf6N2E2_2604	0.29	+0.9
3,061,296	-		Pf6N2E2_2604	0.35	+0.9