Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1030 and Pf6N2E2_1031 are separated by 320 nucleotides Pf6N2E2_1031 and Pf6N2E2_1032 are separated by 1 nucleotides Pf6N2E2_1032 and Pf6N2E2_1033 are separated by 25 nucleotides
Pf6N2E2_1030 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 1,203,869 to 1,204,957
_1030
Pf6N2E2_1031 - Alkanesulfonates transport system permease protein, at 1,205,278 to 1,206,222
_1031
Pf6N2E2_1032 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 1,206,224 to 1,207,036
_1032
Pf6N2E2_1033 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,207,062 to 1,208,087
_1033
Position (kb)
1205
1206
1207 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1204.359 kb on + strand, within Pf6N2E2_1030 at 1204.380 kb on + strand, within Pf6N2E2_1030 at 1204.381 kb on - strand, within Pf6N2E2_1030 at 1204.438 kb on - strand, within Pf6N2E2_1030 at 1204.448 kb on - strand, within Pf6N2E2_1030 at 1204.448 kb on - strand, within Pf6N2E2_1030 at 1204.448 kb on - strand, within Pf6N2E2_1030 at 1204.500 kb on + strand, within Pf6N2E2_1030 at 1204.500 kb on + strand, within Pf6N2E2_1030 at 1204.500 kb on + strand, within Pf6N2E2_1030 at 1204.501 kb on - strand, within Pf6N2E2_1030 at 1204.501 kb on - strand, within Pf6N2E2_1030 at 1204.501 kb on - strand, within Pf6N2E2_1030 at 1204.501 kb on - strand, within Pf6N2E2_1030 at 1204.512 kb on + strand, within Pf6N2E2_1030 at 1204.599 kb on + strand, within Pf6N2E2_1030 at 1204.599 kb on + strand, within Pf6N2E2_1030 at 1204.599 kb on + strand, within Pf6N2E2_1030 at 1204.599 kb on + strand, within Pf6N2E2_1030 at 1204.599 kb on + strand, within Pf6N2E2_1030 at 1204.599 kb on + strand, within Pf6N2E2_1030 at 1204.600 kb on - strand, within Pf6N2E2_1030 at 1204.600 kb on - strand, within Pf6N2E2_1030 at 1204.600 kb on - strand, within Pf6N2E2_1030 at 1204.600 kb on - strand, within Pf6N2E2_1030 at 1204.872 kb on + strand at 1204.873 kb on - strand at 1205.071 kb on + strand at 1205.077 kb on - strand at 1205.320 kb on + strand at 1205.321 kb on - strand at 1205.655 kb on - strand, within Pf6N2E2_1031 at 1205.655 kb on - strand, within Pf6N2E2_1031 at 1205.860 kb on + strand, within Pf6N2E2_1031 at 1205.860 kb on + strand, within Pf6N2E2_1031 at 1205.887 kb on - strand, within Pf6N2E2_1031 at 1206.032 kb on + strand, within Pf6N2E2_1031 at 1206.133 kb on + strand at 1206.133 kb on + strand at 1206.133 kb on + strand at 1206.133 kb on + strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.224 kb on - strand at 1206.757 kb on - strand, within Pf6N2E2_1032 at 1207.000 kb on + strand at 1207.006 kb on + strand at 1207.006 kb on + strand at 1207.007 kb on - strand at 1207.007 kb on - strand at 1207.035 kb on - strand at 1207.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 1,204,359 + Pf6N2E2_1030 0.45 +0.8 1,204,380 + Pf6N2E2_1030 0.47 -0.2 1,204,381 - Pf6N2E2_1030 0.47 +0.8 1,204,438 - Pf6N2E2_1030 0.52 +0.8 1,204,448 - Pf6N2E2_1030 0.53 -0.2 1,204,448 - Pf6N2E2_1030 0.53 +0.8 1,204,448 - Pf6N2E2_1030 0.53 +0.8 1,204,500 + Pf6N2E2_1030 0.58 -1.2 1,204,500 + Pf6N2E2_1030 0.58 +0.8 1,204,500 + Pf6N2E2_1030 0.58 +0.8 1,204,501 - Pf6N2E2_1030 0.58 -0.2 1,204,501 - Pf6N2E2_1030 0.58 -0.2 1,204,501 - Pf6N2E2_1030 0.58 -0.4 1,204,501 - Pf6N2E2_1030 0.58 -0.2 1,204,512 + Pf6N2E2_1030 0.59 -0.9 1,204,599 + Pf6N2E2_1030 0.67 +0.8 1,204,599 + Pf6N2E2_1030 0.67 -0.2 1,204,599 + Pf6N2E2_1030 0.67 +0.8 1,204,599 + Pf6N2E2_1030 0.67 +0.8 1,204,599 + Pf6N2E2_1030 0.67 +0.8 1,204,599 + Pf6N2E2_1030 0.67 +0.8 1,204,600 - Pf6N2E2_1030 0.67 +0.8 1,204,600 - Pf6N2E2_1030 0.67 +0.8 1,204,600 - Pf6N2E2_1030 0.67 -0.2 1,204,600 - Pf6N2E2_1030 0.67 +0.8 1,204,872 + +0.8 1,204,873 - +0.8 1,205,071 + +0.8 1,205,077 - +0.8 1,205,320 + -1.2 1,205,321 - -1.2 1,205,655 - Pf6N2E2_1031 0.40 +0.8 1,205,655 - Pf6N2E2_1031 0.40 -3.1 1,205,860 + Pf6N2E2_1031 0.62 -1.4 1,205,860 + Pf6N2E2_1031 0.62 -0.8 1,205,887 - Pf6N2E2_1031 0.64 +0.8 1,206,032 + Pf6N2E2_1031 0.80 +0.8 1,206,133 + -1.1 1,206,133 + +0.1 1,206,133 + -0.2 1,206,133 + +0.8 1,206,134 - +0.8 1,206,134 - +0.8 1,206,134 - +0.8 1,206,134 - +0.8 1,206,134 - +0.8 1,206,224 - +0.8 1,206,757 - Pf6N2E2_1032 0.66 -0.6 1,207,000 + +0.8 1,207,006 + -0.8 1,207,006 + -0.2 1,207,007 - -2.2 1,207,007 - -0.2 1,207,035 - -0.2 1,207,035 - -0.4
Or see this region's nucleotide sequence