Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3939

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3938 and Pf6N2E2_3939 are separated by 144 nucleotidesPf6N2E2_3939 and Pf6N2E2_3940 are separated by 37 nucleotidesPf6N2E2_3940 and Pf6N2E2_3941 are separated by 143 nucleotides Pf6N2E2_3938 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 4,574,951 to 4,576,465 _3938 Pf6N2E2_3939 - Predicted integral membrane protein, at 4,576,610 to 4,577,035 _3939 Pf6N2E2_3940 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,577,073 to 4,577,729 _3940 Pf6N2E2_3941 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 4,577,873 to 4,578,352 _3941 Position (kb) 4576 4577 4578Strain fitness (log2 ratio) -3 -2 -1 0 1at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.692 kb on + strand, within Pf6N2E2_3938at 4575.693 kb on - strand, within Pf6N2E2_3938at 4575.693 kb on - strand, within Pf6N2E2_3938at 4575.693 kb on - strand, within Pf6N2E2_3938at 4575.693 kb on - strand, within Pf6N2E2_3938at 4575.693 kb on - strand, within Pf6N2E2_3938at 4575.749 kb on - strand, within Pf6N2E2_3938at 4575.749 kb on - strand, within Pf6N2E2_3938at 4575.815 kb on + strand, within Pf6N2E2_3938at 4576.025 kb on + strand, within Pf6N2E2_3938at 4576.026 kb on - strand, within Pf6N2E2_3938at 4576.032 kb on - strand, within Pf6N2E2_3938at 4576.032 kb on - strand, within Pf6N2E2_3938at 4576.032 kb on - strand, within Pf6N2E2_3938at 4576.435 kb on + strandat 4576.445 kb on + strandat 4576.445 kb on + strandat 4576.574 kb on + strandat 4576.574 kb on + strandat 4576.574 kb on + strandat 4576.574 kb on + strandat 4576.574 kb on + strandat 4576.574 kb on + strandat 4576.575 kb on - strandat 4576.575 kb on - strandat 4576.575 kb on - strandat 4576.575 kb on - strandat 4576.575 kb on - strandat 4576.575 kb on - strandat 4576.575 kb on - strandat 4576.596 kb on - strandat 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.878 kb on - strand, within Pf6N2E2_3939at 4576.878 kb on - strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.961 kb on - strand, within Pf6N2E2_3939at 4576.961 kb on - strand, within Pf6N2E2_3939at 4577.065 kb on + strandat 4577.201 kb on - strand, within Pf6N2E2_3940at 4577.201 kb on - strand, within Pf6N2E2_3940at 4577.206 kb on + strand, within Pf6N2E2_3940at 4577.206 kb on + strand, within Pf6N2E2_3940at 4577.206 kb on + strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.306 kb on - strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.492 kb on - strand, within Pf6N2E2_3940at 4577.560 kb on + strand, within Pf6N2E2_3940at 4577.560 kb on + strand, within Pf6N2E2_3940at 4577.590 kb on + strand, within Pf6N2E2_3940at 4577.591 kb on - strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.659 kb on + strand, within Pf6N2E2_3940at 4577.660 kb on - strand, within Pf6N2E2_3940at 4577.660 kb on - strand, within Pf6N2E2_3940at 4577.715 kb on + strandat 4577.736 kb on + strandat 4577.737 kb on - strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.801 kb on + strandat 4577.802 kb on - strandat 4577.918 kb on - strandat 4577.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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4,575,692 + Pf6N2E2_3938 0.49 +1.0
4,575,692 + Pf6N2E2_3938 0.49 -0.6
4,575,692 + Pf6N2E2_3938 0.49 -0.0
4,575,692 + Pf6N2E2_3938 0.49 +1.0
4,575,692 + Pf6N2E2_3938 0.49 -0.6
4,575,692 + Pf6N2E2_3938 0.49 +1.0
4,575,692 + Pf6N2E2_3938 0.49 -1.0
4,575,692 + Pf6N2E2_3938 0.49 -1.0
4,575,692 + Pf6N2E2_3938 0.49 +1.0
4,575,692 + Pf6N2E2_3938 0.49 +0.8
4,575,693 - Pf6N2E2_3938 0.49 +1.0
4,575,693 - Pf6N2E2_3938 0.49 +1.0
4,575,693 - Pf6N2E2_3938 0.49 +1.0
4,575,693 - Pf6N2E2_3938 0.49 -1.6
4,575,693 - Pf6N2E2_3938 0.49 +1.0
4,575,749 - Pf6N2E2_3938 0.53 +1.0
4,575,749 - Pf6N2E2_3938 0.53 -0.2
4,575,815 + Pf6N2E2_3938 0.57 -0.4
4,576,025 + Pf6N2E2_3938 0.71 +1.0
4,576,026 - Pf6N2E2_3938 0.71 -0.0
4,576,032 - Pf6N2E2_3938 0.71 -0.4
4,576,032 - Pf6N2E2_3938 0.71 -1.6
4,576,032 - Pf6N2E2_3938 0.71 -1.6
4,576,435 + +1.0
4,576,445 + +1.0
4,576,445 + +0.5
4,576,574 + +1.0
4,576,574 + +1.0
4,576,574 + -0.0
4,576,574 + -0.6
4,576,574 + -0.0
4,576,574 + -0.1
4,576,575 - +1.0
4,576,575 - -0.6
4,576,575 - -0.0
4,576,575 - -0.6
4,576,575 - -0.0
4,576,575 - -1.0
4,576,575 - -1.8
4,576,596 - -0.4
4,576,877 + Pf6N2E2_3939 0.63 -0.6
4,576,877 + Pf6N2E2_3939 0.63 -0.0
4,576,877 + Pf6N2E2_3939 0.63 -0.8
4,576,877 + Pf6N2E2_3939 0.63 -1.0
4,576,878 - Pf6N2E2_3939 0.63 -0.6
4,576,878 - Pf6N2E2_3939 0.63 -1.5
4,576,879 + Pf6N2E2_3939 0.63 +1.0
4,576,879 + Pf6N2E2_3939 0.63 -0.6
4,576,879 + Pf6N2E2_3939 0.63 +1.0
4,576,879 + Pf6N2E2_3939 0.63 -0.6
4,576,879 + Pf6N2E2_3939 0.63 -0.0
4,576,880 - Pf6N2E2_3939 0.63 +1.0
4,576,880 - Pf6N2E2_3939 0.63 -0.0
4,576,880 - Pf6N2E2_3939 0.63 +1.0
4,576,880 - Pf6N2E2_3939 0.63 -0.0
4,576,880 - Pf6N2E2_3939 0.63 +1.0
4,576,961 - Pf6N2E2_3939 0.82 +1.0
4,576,961 - Pf6N2E2_3939 0.82 +1.0
4,577,065 + -0.0
4,577,201 - Pf6N2E2_3940 0.19 -0.3
4,577,201 - Pf6N2E2_3940 0.19 -0.0
4,577,206 + Pf6N2E2_3940 0.20 -0.1
4,577,206 + Pf6N2E2_3940 0.20 -2.3
4,577,206 + Pf6N2E2_3940 0.20 -0.0
4,577,207 - Pf6N2E2_3940 0.20 -0.0
4,577,207 - Pf6N2E2_3940 0.20 -0.2
4,577,207 - Pf6N2E2_3940 0.20 +1.0
4,577,207 - Pf6N2E2_3940 0.20 -0.0
4,577,306 - Pf6N2E2_3940 0.35 +0.6
4,577,491 + Pf6N2E2_3940 0.64 -0.4
4,577,491 + Pf6N2E2_3940 0.64 -0.3
4,577,491 + Pf6N2E2_3940 0.64 +1.0
4,577,491 + Pf6N2E2_3940 0.64 -0.2
4,577,492 - Pf6N2E2_3940 0.64 +1.0
4,577,560 + Pf6N2E2_3940 0.74 -0.2
4,577,560 + Pf6N2E2_3940 0.74 -0.6
4,577,590 + Pf6N2E2_3940 0.79 -0.7
4,577,591 - Pf6N2E2_3940 0.79 -0.0
4,577,623 + Pf6N2E2_3940 0.84 +1.0
4,577,623 + Pf6N2E2_3940 0.84 -0.2
4,577,623 + Pf6N2E2_3940 0.84 +1.0
4,577,623 + Pf6N2E2_3940 0.84 -1.0
4,577,623 + Pf6N2E2_3940 0.84 +1.0
4,577,623 + Pf6N2E2_3940 0.84 -0.6
4,577,623 + Pf6N2E2_3940 0.84 +1.0
4,577,623 + Pf6N2E2_3940 0.84 +1.0
4,577,623 + Pf6N2E2_3940 0.84 -1.7
4,577,623 + Pf6N2E2_3940 0.84 -2.8
4,577,623 + Pf6N2E2_3940 0.84 -0.4
4,577,623 + Pf6N2E2_3940 0.84 -1.6
4,577,624 - Pf6N2E2_3940 0.84 -0.3
4,577,624 - Pf6N2E2_3940 0.84 +1.0
4,577,624 - Pf6N2E2_3940 0.84 -0.2
4,577,624 - Pf6N2E2_3940 0.84 -0.6
4,577,659 + Pf6N2E2_3940 0.89 +1.0
4,577,660 - Pf6N2E2_3940 0.89 +1.0
4,577,660 - Pf6N2E2_3940 0.89 +1.0
4,577,715 + +1.0
4,577,736 + -0.0
4,577,737 - -0.6
4,577,796 + -0.0
4,577,796 + +1.0
4,577,796 + -0.0
4,577,796 + -0.0
4,577,796 + -0.0
4,577,797 - -0.7
4,577,797 - +1.0
4,577,797 - -0.0
4,577,797 - -0.0
4,577,797 - +1.0
4,577,797 - -0.0
4,577,797 - +1.0
4,577,797 - +1.0
4,577,801 + +1.0
4,577,802 - +1.0
4,577,918 - +1.0
4,577,918 - +1.0

Or see this region's nucleotide sequence