Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3772

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
4,394,228	+				+1.0
4,394,279	+				+0.0
4,394,279	+				+1.0
4,394,280	-				+1.0
4,394,280	-				+0.0
4,394,863	+				+1.0
4,394,864	-				+1.0
4,394,864	-				-1.3
4,394,864	-				+1.0
4,394,864	-				+0.0
4,394,991	+				-1.3
4,394,991	+				-0.6
4,394,992	-				-0.5
4,394,992	-				+0.7
4,395,022	+				-1.3
4,395,022	+				+0.0
4,395,022	+				+1.0
4,395,022	+				+1.0
4,395,022	+				+1.0
4,395,022	+				+1.0
4,395,022	+				-0.6
4,395,023	-				-0.8
4,395,023	-				+1.3
4,395,023	-				-2.7
4,395,053	+				+1.0
4,395,053	+				-0.3
4,395,053	+				+1.0
4,395,053	+				+0.4
4,395,054	-				+1.0
4,395,054	-				-0.4
4,395,054	-				+0.0
4,395,054	-				+1.0
4,395,054	-				+0.0
4,395,074	-				+0.4
4,395,074	-				+1.0
4,395,074	-				-0.6
4,395,142	-				-0.6
4,395,174	+				+1.0
4,395,174	+				-0.6
4,395,174	+				+1.0
4,395,175	-				-1.0
4,395,175	-				-0.6
4,395,175	-				-1.1
4,395,175	-				-0.2
4,395,175	-				+1.0
4,395,175	-				-0.2
4,395,191	+				+0.0
4,395,192	-				-0.6
4,395,412	-		Pf6N2E2_3772	0.16	+0.0
4,395,412	-		Pf6N2E2_3772	0.16	+0.0
4,395,412	-		Pf6N2E2_3772	0.16	+0.0
4,395,420	+		Pf6N2E2_3772	0.16	-0.6
4,395,420	+		Pf6N2E2_3772	0.16	-0.6
4,395,421	-		Pf6N2E2_3772	0.16	-1.0
4,395,432	+		Pf6N2E2_3772	0.17	+2.0
4,395,828	+		Pf6N2E2_3772	0.41	-1.7
4,395,828	+		Pf6N2E2_3772	0.41	-1.5
4,395,828	+		Pf6N2E2_3772	0.41	+0.0
4,395,828	+		Pf6N2E2_3772	0.41	-0.5
4,395,829	-		Pf6N2E2_3772	0.41	+0.0
4,395,829	-		Pf6N2E2_3772	0.41	-0.4
4,395,829	-		Pf6N2E2_3772	0.41	+1.0
4,395,832	+		Pf6N2E2_3772	0.41	-0.6
4,395,832	+		Pf6N2E2_3772	0.41	-0.9
4,395,832	+		Pf6N2E2_3772	0.41	-1.0
4,395,832	+		Pf6N2E2_3772	0.41	+0.0
4,395,833	-		Pf6N2E2_3772	0.41	+0.0
4,395,833	-		Pf6N2E2_3772	0.41	+1.0
4,395,951	+		Pf6N2E2_3772	0.48	+0.0
4,395,951	+		Pf6N2E2_3772	0.48	-2.5
4,395,951	+		Pf6N2E2_3772	0.48	+1.0
4,395,951	+		Pf6N2E2_3772	0.48	+0.0
4,395,952	-		Pf6N2E2_3772	0.48	+0.0
4,395,952	-		Pf6N2E2_3772	0.48	+0.0
4,395,952	-		Pf6N2E2_3772	0.48	+1.0
4,396,068	+		Pf6N2E2_3772	0.55	-1.3
4,396,198	-		Pf6N2E2_3772	0.63	+1.0
4,396,211	-		Pf6N2E2_3772	0.64	-1.0
4,396,211	-		Pf6N2E2_3772	0.64	+0.0
4,396,275	+		Pf6N2E2_3772	0.67	+0.0
4,396,290	+		Pf6N2E2_3772	0.68	+1.0
4,396,290	+		Pf6N2E2_3772	0.68	+0.0
4,396,291	-		Pf6N2E2_3772	0.68	-0.6
4,396,291	-		Pf6N2E2_3772	0.68	+1.0
4,396,291	-		Pf6N2E2_3772	0.68	-0.6
4,396,291	-		Pf6N2E2_3772	0.68	+1.0
4,396,521	+		Pf6N2E2_3772	0.82	+1.0
4,396,522	-		Pf6N2E2_3772	0.82	+1.0
4,396,522	-		Pf6N2E2_3772	0.82	+1.0
4,396,522	-		Pf6N2E2_3772	0.82	-0.6
4,396,561	+		Pf6N2E2_3772	0.84	+1.0
4,396,561	+		Pf6N2E2_3772	0.84	-1.0
4,396,562	-		Pf6N2E2_3772	0.84	-0.5
4,396,562	-		Pf6N2E2_3772	0.84	-1.3
4,396,624	-		Pf6N2E2_3772	0.88	-0.6
4,396,806	+				+1.0
4,396,806	+				-0.8
4,396,806	+				-1.1
4,396,806	+				-0.4
4,396,806	+				+0.0
4,396,806	+				-0.3
4,396,807	-				+1.0
4,396,807	-				-0.9
4,396,807	-				+0.6
4,396,807	-				-0.1
4,396,807	-				+1.0
4,396,807	-				-0.6
4,396,807	-				-0.6
4,396,807	-				+1.5
4,396,807	-				+0.2
4,396,807	-				+1.0
4,396,821	+				-1.0
4,396,822	-				+1.0
4,396,822	-				+0.0
4,396,843	+				+0.0
4,396,920	+				-2.8
4,396,920	+				+1.0
4,396,920	+				-0.6
4,396,920	+				+1.0
4,396,920	+				+0.0
4,396,920	+				-0.6
4,396,921	-				+1.0
4,396,921	-				+1.0
4,396,921	-				+1.0
4,396,921	-				-0.7
4,396,921	-				-0.2
4,396,921	-				+1.0
4,396,921	-				+0.0
4,396,970	-				+1.0
4,397,185	-		Pf6N2E2_3773	0.32	+0.0
4,397,355	+		Pf6N2E2_3773	0.52	-0.5
4,397,356	-		Pf6N2E2_3773	0.52	+1.0
4,397,377	+		Pf6N2E2_3773	0.55	+0.7
4,397,377	+		Pf6N2E2_3773	0.55	+0.0
4,397,377	+		Pf6N2E2_3773	0.55	+0.0
4,397,378	-		Pf6N2E2_3773	0.55	-0.7
4,397,378	-		Pf6N2E2_3773	0.55	+1.0
4,397,378	-		Pf6N2E2_3773	0.55	-1.2
4,397,378	-		Pf6N2E2_3773	0.55	-0.6
4,397,381	+		Pf6N2E2_3773	0.55	+1.3
4,397,381	+		Pf6N2E2_3773	0.55	+0.0
4,397,381	+		Pf6N2E2_3773	0.55	-1.2
4,397,397	+		Pf6N2E2_3773	0.57	+1.0
4,397,397	+		Pf6N2E2_3773	0.57	-0.6
4,397,398	-		Pf6N2E2_3773	0.57	-0.8
4,397,479	-		Pf6N2E2_3773	0.67	+0.0
4,397,820	+				-0.6
4,397,820	+				-0.4
4,397,820	+				+1.0
4,397,820	+				-0.8
4,397,821	-				-0.2
4,397,821	-				+1.0
4,397,821	-				+0.0
4,397,821	-				-0.6