Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3740

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
4,355,464	+				-0.4
4,355,798	-		Pf6N2E2_3739	0.38	+1.0
4,355,933	+		Pf6N2E2_3739	0.54	+1.0
4,356,010	+		Pf6N2E2_3739	0.63	+1.0
4,356,010	+		Pf6N2E2_3739	0.63	+0.0
4,356,011	-		Pf6N2E2_3739	0.63	+1.0
4,356,110	+		Pf6N2E2_3739	0.75	-0.5
4,356,111	-		Pf6N2E2_3739	0.75	-0.6
4,356,128	+		Pf6N2E2_3739	0.77	+0.0
4,356,129	-		Pf6N2E2_3739	0.77	+0.0
4,356,143	+		Pf6N2E2_3739	0.78	+0.0
4,356,144	-		Pf6N2E2_3739	0.79	-0.6
4,356,144	-		Pf6N2E2_3739	0.79	-1.0
4,356,455	-		Pf6N2E2_3740	0.25	-2.8
4,356,455	-		Pf6N2E2_3740	0.25	+1.0
4,356,455	-		Pf6N2E2_3740	0.25	-0.3
4,356,475	+		Pf6N2E2_3740	0.29	-0.6
4,356,475	+		Pf6N2E2_3740	0.29	+1.0
4,356,475	+		Pf6N2E2_3740	0.29	+0.0
4,356,476	-		Pf6N2E2_3740	0.29	+0.0
4,356,476	-		Pf6N2E2_3740	0.29	-0.6
4,356,615	+		Pf6N2E2_3740	0.55	+1.0
4,356,616	-		Pf6N2E2_3740	0.55	-1.5
4,356,849	+				+0.0
4,356,849	+				+0.0
4,356,849	+				+1.0
4,356,850	-				-1.0
4,357,491	+		Pf6N2E2_3742	0.56	+0.0
4,357,491	+		Pf6N2E2_3742	0.56	+1.0
4,357,491	+		Pf6N2E2_3742	0.56	+1.0
4,357,491	+		Pf6N2E2_3742	0.56	-1.8
4,357,497	+		Pf6N2E2_3742	0.58	-0.6
4,357,498	-		Pf6N2E2_3742	0.58	+0.0
4,357,498	-		Pf6N2E2_3742	0.58	+1.0
4,357,504	+		Pf6N2E2_3742	0.59	-0.3
4,357,767	+		Pf6N2E2_3743	0.15	+0.0
4,357,768	-		Pf6N2E2_3743	0.16	+1.0
4,357,768	-		Pf6N2E2_3743	0.16	+0.7
4,357,818	+		Pf6N2E2_3743	0.27	+1.0