Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1 and Pf6N2E2_2 are separated by 145 nucleotides Pf6N2E2_2 and Pf6N2E2_3 are separated by 273 nucleotides
Pf6N2E2_1 - Trans-aconitate 2-methyltransferase (EC 2.1.1.144), at 90 to 860
_1
Pf6N2E2_2 - FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis, at 1,006 to 1,740
_2
Pf6N2E2_3 - Non-ribosomal peptide synthetase modules, pyoverdine, at 2,014 to 14,454
_3
Position (kb) 1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.027 kb on + strand at 0.028 kb on - strand at 0.035 kb on - strand at 0.035 kb on - strand at 0.158 kb on - strand at 0.181 kb on + strand, within Pf6N2E2_1 at 0.182 kb on - strand, within Pf6N2E2_1 at 0.193 kb on + strand, within Pf6N2E2_1 at 0.298 kb on + strand, within Pf6N2E2_1 at 0.349 kb on + strand, within Pf6N2E2_1 at 0.353 kb on - strand, within Pf6N2E2_1 at 0.353 kb on - strand, within Pf6N2E2_1 at 0.369 kb on + strand, within Pf6N2E2_1 at 0.370 kb on - strand, within Pf6N2E2_1 at 0.370 kb on - strand, within Pf6N2E2_1 at 0.838 kb on + strand at 0.839 kb on - strand at 0.839 kb on - strand at 0.839 kb on - strand at 0.902 kb on + strand at 0.902 kb on + strand at 0.902 kb on + strand at 0.903 kb on - strand at 0.904 kb on + strand at 0.904 kb on + strand at 0.904 kb on + strand at 0.904 kb on + strand at 0.905 kb on - strand at 0.905 kb on - strand at 0.948 kb on - strand at 0.955 kb on + strand at 0.955 kb on + strand at 1.037 kb on - strand at 1.060 kb on + strand at 1.060 kb on + strand at 1.060 kb on + strand at 1.061 kb on - strand at 1.349 kb on - strand, within Pf6N2E2_2 at 1.430 kb on + strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.960 kb on - strand at 2.173 kb on + strand at 2.227 kb on + strand at 2.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 27 + +0.9 28 - -0.1 35 - -0.1 35 - -1.1 158 - -0.1 181 + Pf6N2E2_1 0.12 -0.1 182 - Pf6N2E2_1 0.12 -0.4 193 + Pf6N2E2_1 0.13 -0.1 298 + Pf6N2E2_1 0.27 -0.7 349 + Pf6N2E2_1 0.34 -1.1 353 - Pf6N2E2_1 0.34 +1.9 353 - Pf6N2E2_1 0.34 +0.9 369 + Pf6N2E2_1 0.36 +0.9 370 - Pf6N2E2_1 0.36 +0.9 370 - Pf6N2E2_1 0.36 +0.9 838 + -1.8 839 - -1.7 839 - +0.9 839 - -1.8 902 + +0.9 902 + +0.9 902 + -0.7 903 - -0.1 904 + -0.1 904 + +0.9 904 + -0.1 904 + -0.9 905 - +0.9 905 - +0.9 948 - +0.9 955 + +0.9 955 + -0.1 1,037 - -1.1 1,060 + -1.1 1,060 + +0.9 1,060 + -0.1 1,061 - -0.1 1,349 - Pf6N2E2_2 0.47 +0.6 1,430 + Pf6N2E2_2 0.58 +0.4 1,431 - Pf6N2E2_2 0.58 +0.9 1,431 - Pf6N2E2_2 0.58 +0.2 1,431 - Pf6N2E2_2 0.58 -0.9 1,960 - -0.7 2,173 + -0.1 2,227 + -0.1 2,228 - -0.1
Or see this region's nucleotide sequence