Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_593 and Pf6N2E2_594 are separated by 203 nucleotides Pf6N2E2_594 and Pf6N2E2_595 are separated by 197 nucleotides Pf6N2E2_595 and Pf6N2E2_596 are separated by 37 nucleotides
Pf6N2E2_593 - FIG00958166: hypothetical protein, at 670,006 to 670,269
_593
Pf6N2E2_594 - FMN reductase, NADPH-dependent, at 670,473 to 671,012
_594
Pf6N2E2_595 - Arsenical resistance operon repressor, at 671,210 to 671,560
_595
Pf6N2E2_596 - Arsenic efflux pump protein, at 671,598 to 672,881
_596
Position (kb) 671
672 Strain fitness (log2 ratio) -2
-1
0
1 at 670.259 kb on - strand at 670.275 kb on - strand at 670.343 kb on + strand at 670.344 kb on - strand at 670.412 kb on + strand at 670.412 kb on + strand at 670.412 kb on + strand at 670.412 kb on + strand at 670.412 kb on + strand at 670.412 kb on + strand at 670.413 kb on - strand at 670.413 kb on - strand at 670.414 kb on + strand at 670.414 kb on + strand at 670.415 kb on - strand at 670.415 kb on - strand at 670.415 kb on - strand at 670.418 kb on + strand at 670.418 kb on + strand at 670.418 kb on + strand at 670.418 kb on + strand at 670.418 kb on + strand at 670.419 kb on - strand at 670.460 kb on + strand at 670.460 kb on + strand at 670.460 kb on + strand at 670.461 kb on - strand at 670.461 kb on - strand at 670.461 kb on - strand at 670.467 kb on + strand at 670.596 kb on + strand, within Pf6N2E2_594 at 670.597 kb on - strand, within Pf6N2E2_594 at 670.597 kb on - strand, within Pf6N2E2_594 at 670.597 kb on - strand, within Pf6N2E2_594 at 670.597 kb on - strand, within Pf6N2E2_594 at 670.597 kb on - strand, within Pf6N2E2_594 at 670.598 kb on + strand, within Pf6N2E2_594 at 670.598 kb on + strand, within Pf6N2E2_594 at 670.599 kb on - strand, within Pf6N2E2_594 at 670.615 kb on + strand, within Pf6N2E2_594 at 670.615 kb on + strand, within Pf6N2E2_594 at 670.615 kb on + strand, within Pf6N2E2_594 at 670.615 kb on + strand, within Pf6N2E2_594 at 670.632 kb on + strand, within Pf6N2E2_594 at 670.632 kb on + strand, within Pf6N2E2_594 at 670.632 kb on + strand, within Pf6N2E2_594 at 670.692 kb on + strand, within Pf6N2E2_594 at 670.692 kb on + strand, within Pf6N2E2_594 at 670.692 kb on + strand, within Pf6N2E2_594 at 670.692 kb on + strand, within Pf6N2E2_594 at 670.693 kb on - strand, within Pf6N2E2_594 at 670.968 kb on - strand at 670.968 kb on - strand at 671.031 kb on - strand at 671.173 kb on - strand at 671.174 kb on + strand at 671.175 kb on - strand at 671.175 kb on - strand at 671.188 kb on + strand at 671.206 kb on - strand at 671.206 kb on - strand at 671.420 kb on + strand, within Pf6N2E2_595 at 671.420 kb on + strand, within Pf6N2E2_595 at 671.424 kb on - strand, within Pf6N2E2_595 at 671.424 kb on - strand, within Pf6N2E2_595 at 671.633 kb on + strand at 671.633 kb on + strand at 671.633 kb on + strand at 671.753 kb on + strand, within Pf6N2E2_596 at 671.771 kb on + strand, within Pf6N2E2_596 at 671.771 kb on + strand, within Pf6N2E2_596 at 671.772 kb on - strand, within Pf6N2E2_596 at 671.888 kb on + strand, within Pf6N2E2_596 at 671.888 kb on + strand, within Pf6N2E2_596 at 671.888 kb on + strand, within Pf6N2E2_596 at 672.271 kb on - strand, within Pf6N2E2_596 at 672.465 kb on + strand, within Pf6N2E2_596 at 672.465 kb on + strand, within Pf6N2E2_596 at 672.465 kb on + strand, within Pf6N2E2_596 at 672.477 kb on + strand, within Pf6N2E2_596 at 672.507 kb on + strand, within Pf6N2E2_596
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 670,259 - -1.7 670,275 - -0.1 670,343 + -1.9 670,344 - -0.1 670,412 + +0.9 670,412 + +0.9 670,412 + +0.9 670,412 + +0.9 670,412 + -0.5 670,412 + -0.1 670,413 - +0.9 670,413 - +0.9 670,414 + +0.9 670,414 + -0.7 670,415 - -1.1 670,415 - -0.1 670,415 - -0.1 670,418 + -0.7 670,418 + +0.3 670,418 + +0.9 670,418 + +0.9 670,418 + +0.9 670,419 - -0.1 670,460 + +0.9 670,460 + +0.9 670,460 + -0.7 670,461 - -0.1 670,461 - +0.9 670,461 - -0.1 670,467 + +0.9 670,596 + Pf6N2E2_594 0.23 +0.9 670,597 - Pf6N2E2_594 0.23 +0.9 670,597 - Pf6N2E2_594 0.23 +0.1 670,597 - Pf6N2E2_594 0.23 -0.1 670,597 - Pf6N2E2_594 0.23 +0.9 670,597 - Pf6N2E2_594 0.23 +0.9 670,598 + Pf6N2E2_594 0.23 +0.9 670,598 + Pf6N2E2_594 0.23 +0.9 670,599 - Pf6N2E2_594 0.23 +0.9 670,615 + Pf6N2E2_594 0.26 -2.0 670,615 + Pf6N2E2_594 0.26 -0.1 670,615 + Pf6N2E2_594 0.26 +0.9 670,615 + Pf6N2E2_594 0.26 +0.9 670,632 + Pf6N2E2_594 0.29 -1.1 670,632 + Pf6N2E2_594 0.29 +0.9 670,632 + Pf6N2E2_594 0.29 +0.9 670,692 + Pf6N2E2_594 0.41 +0.9 670,692 + Pf6N2E2_594 0.41 +0.9 670,692 + Pf6N2E2_594 0.41 -0.7 670,692 + Pf6N2E2_594 0.41 -0.8 670,693 - Pf6N2E2_594 0.41 +0.9 670,968 - -0.1 670,968 - +0.9 671,031 - -0.1 671,173 - -0.1 671,174 + -1.1 671,175 - +0.3 671,175 - -0.4 671,188 + -0.7 671,206 - +0.9 671,206 - +0.9 671,420 + Pf6N2E2_595 0.60 -0.1 671,420 + Pf6N2E2_595 0.60 -1.5 671,424 - Pf6N2E2_595 0.61 +0.9 671,424 - Pf6N2E2_595 0.61 +0.9 671,633 + +0.9 671,633 + +0.9 671,633 + -0.8 671,753 + Pf6N2E2_596 0.12 +0.2 671,771 + Pf6N2E2_596 0.13 -1.0 671,771 + Pf6N2E2_596 0.13 -1.0 671,772 - Pf6N2E2_596 0.14 -0.1 671,888 + Pf6N2E2_596 0.23 -0.1 671,888 + Pf6N2E2_596 0.23 +0.9 671,888 + Pf6N2E2_596 0.23 +0.9 672,271 - Pf6N2E2_596 0.52 -0.1 672,465 + Pf6N2E2_596 0.68 -0.1 672,465 + Pf6N2E2_596 0.68 +0.9 672,465 + Pf6N2E2_596 0.68 +0.9 672,477 + Pf6N2E2_596 0.68 +0.9 672,507 + Pf6N2E2_596 0.71 +0.9
Or see this region's nucleotide sequence