Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5647

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
6,458,894	+		Pf6N2E2_5645	0.63	+1.0
6,458,895	-		Pf6N2E2_5645	0.63	-0.6
6,458,895	-		Pf6N2E2_5645	0.63	-2.3
6,458,895	-		Pf6N2E2_5645	0.63	+0.0
6,458,895	-		Pf6N2E2_5645	0.63	-0.3
6,458,912	-		Pf6N2E2_5645	0.65	+0.0
6,459,144	-		Pf6N2E2_5645	0.89	-0.6
6,459,144	-		Pf6N2E2_5645	0.89	-0.6
6,459,296	+				+0.0
6,459,298	+				+1.0
6,459,298	+				+0.0
6,459,298	+				+1.0
6,459,298	+				-1.6
6,459,299	-				-1.1
6,459,299	-				+1.0
6,459,299	-				+1.0
6,459,299	-				+1.0
6,459,559	+		Pf6N2E2_5646	0.20	+1.0
6,459,604	+		Pf6N2E2_5646	0.32	+0.0
6,459,604	+		Pf6N2E2_5646	0.32	-0.1
6,459,868	+				-0.8
6,459,869	-				+1.0
6,460,273	+		Pf6N2E2_5647	0.62	-2.7
6,460,273	+		Pf6N2E2_5647	0.62	-1.8
6,460,274	-		Pf6N2E2_5647	0.62	-1.0
6,460,360	+		Pf6N2E2_5647	0.77	+0.0
6,460,360	+		Pf6N2E2_5647	0.77	-2.2
6,460,360	+		Pf6N2E2_5647	0.77	-0.6
6,460,360	+		Pf6N2E2_5647	0.77	+0.0
6,460,361	-		Pf6N2E2_5647	0.77	-0.4
6,460,361	-		Pf6N2E2_5647	0.77	+0.0
6,460,361	-		Pf6N2E2_5647	0.77	-1.3
6,460,361	-		Pf6N2E2_5647	0.77	-1.7
6,460,361	-		Pf6N2E2_5647	0.77	-0.6
6,460,532	+				+1.0
6,460,532	+				-1.1
6,460,685	-				+0.0
6,460,762	+				-0.4
6,460,763	-				+1.0
6,460,812	+		Pf6N2E2_5648	0.11	-0.2
6,460,813	-		Pf6N2E2_5648	0.11	-0.2
6,461,104	+		Pf6N2E2_5648	0.39	+0.7
6,461,105	-		Pf6N2E2_5648	0.39	+1.0
6,461,105	-		Pf6N2E2_5648	0.39	+0.0
6,461,461	+		Pf6N2E2_5648	0.73	-0.3
6,461,461	+		Pf6N2E2_5648	0.73	+1.0
6,461,461	+		Pf6N2E2_5648	0.73	-0.6
6,461,461	+		Pf6N2E2_5648	0.73	-0.6
6,461,462	-		Pf6N2E2_5648	0.73	-0.5
6,461,462	-		Pf6N2E2_5648	0.73	+0.0
6,461,462	-		Pf6N2E2_5648	0.73	-0.6
6,461,462	-		Pf6N2E2_5648	0.73	-1.3
6,461,462	-		Pf6N2E2_5648	0.73	-1.6
6,461,462	-		Pf6N2E2_5648	0.73	+0.0
6,461,464	-		Pf6N2E2_5648	0.73	-0.8