Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4697 and Pf6N2E2_4698 are separated by 142 nucleotides Pf6N2E2_4698 and Pf6N2E2_4699 are separated by 100 nucleotides Pf6N2E2_4699 and Pf6N2E2_4700 are separated by 234 nucleotides
Pf6N2E2_4697 - hypothetical protein, at 5,430,286 to 5,431,062
_4697
Pf6N2E2_4698 - putative DNA binding protein, at 5,431,205 to 5,431,531
_4698
Pf6N2E2_4699 - FIG00953563: hypothetical protein, at 5,431,632 to 5,432,033
_4699
Pf6N2E2_4700 - Microsomal dipeptidase (EC 3.4.13.19), at 5,432,268 to 5,433,245
_4700
Position (kb) 5431
5432
5433 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.717 kb on - strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.879 kb on + strand, within Pf6N2E2_4697 at 5430.879 kb on + strand, within Pf6N2E2_4697 at 5430.880 kb on - strand, within Pf6N2E2_4697 at 5430.880 kb on - strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5431.017 kb on + strand at 5431.023 kb on + strand at 5431.024 kb on - strand at 5431.024 kb on - strand at 5431.024 kb on - strand at 5431.027 kb on + strand at 5431.027 kb on + strand at 5431.028 kb on - strand at 5431.028 kb on - strand at 5431.034 kb on + strand at 5431.034 kb on + strand at 5431.034 kb on + strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.063 kb on - strand at 5431.063 kb on - strand at 5431.063 kb on - strand at 5431.078 kb on + strand at 5431.079 kb on - strand at 5431.086 kb on - strand at 5431.124 kb on + strand at 5431.125 kb on - strand at 5431.125 kb on - strand at 5431.148 kb on - strand at 5431.160 kb on - strand at 5431.160 kb on - strand at 5431.160 kb on - strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.177 kb on - strand at 5431.177 kb on - strand at 5431.177 kb on - strand at 5431.206 kb on + strand at 5431.207 kb on - strand at 5431.207 kb on - strand at 5431.231 kb on + strand at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.458 kb on + strand, within Pf6N2E2_4698 at 5431.511 kb on - strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.573 kb on + strand at 5431.576 kb on - strand at 5431.677 kb on + strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.913 kb on - strand, within Pf6N2E2_4699 at 5432.127 kb on + strand at 5432.127 kb on + strand at 5432.127 kb on + strand at 5432.128 kb on - strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.577 kb on + strand, within Pf6N2E2_4700 at 5432.625 kb on + strand, within Pf6N2E2_4700 at 5432.625 kb on + strand, within Pf6N2E2_4700 at 5432.658 kb on + strand, within Pf6N2E2_4700 at 5432.659 kb on - strand, within Pf6N2E2_4700 at 5432.799 kb on + strand, within Pf6N2E2_4700 at 5432.800 kb on - strand, within Pf6N2E2_4700 at 5432.968 kb on - strand, within Pf6N2E2_4700
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 5,430,716 + Pf6N2E2_4697 0.55 -1.6 5,430,716 + Pf6N2E2_4697 0.55 +1.0 5,430,716 + Pf6N2E2_4697 0.55 -0.6 5,430,717 - Pf6N2E2_4697 0.55 -1.9 5,430,737 + Pf6N2E2_4697 0.58 -0.2 5,430,737 + Pf6N2E2_4697 0.58 -0.6 5,430,737 + Pf6N2E2_4697 0.58 +0.0 5,430,738 - Pf6N2E2_4697 0.58 +0.0 5,430,738 - Pf6N2E2_4697 0.58 -0.6 5,430,738 - Pf6N2E2_4697 0.58 +1.0 5,430,738 - Pf6N2E2_4697 0.58 +1.0 5,430,879 + Pf6N2E2_4697 0.76 +1.0 5,430,879 + Pf6N2E2_4697 0.76 -1.0 5,430,880 - Pf6N2E2_4697 0.76 -1.0 5,430,880 - Pf6N2E2_4697 0.76 +0.0 5,430,922 + Pf6N2E2_4697 0.82 -0.6 5,430,922 + Pf6N2E2_4697 0.82 -1.0 5,430,922 + Pf6N2E2_4697 0.82 +0.0 5,430,922 + Pf6N2E2_4697 0.82 +1.0 5,430,923 - Pf6N2E2_4697 0.82 +0.0 5,430,923 - Pf6N2E2_4697 0.82 +0.0 5,430,923 - Pf6N2E2_4697 0.82 +1.0 5,430,923 - Pf6N2E2_4697 0.82 -0.2 5,430,923 - Pf6N2E2_4697 0.82 +1.0 5,430,923 - Pf6N2E2_4697 0.82 +1.0 5,431,017 + -0.6 5,431,023 + +0.0 5,431,024 - +1.0 5,431,024 - -0.6 5,431,024 - -0.2 5,431,027 + +1.0 5,431,027 + -0.5 5,431,028 - -1.0 5,431,028 - +1.0 5,431,034 + -0.6 5,431,034 + -0.9 5,431,034 + -0.4 5,431,035 - +1.0 5,431,035 - +0.0 5,431,035 - -0.6 5,431,035 - +1.0 5,431,035 - -1.3 5,431,035 - +1.0 5,431,036 + +1.0 5,431,036 + +1.0 5,431,036 + +0.0 5,431,036 + +0.0 5,431,037 - -2.6 5,431,037 - +0.8 5,431,037 - +0.0 5,431,037 - +1.0 5,431,037 - -0.5 5,431,037 - +1.0 5,431,062 + +0.0 5,431,062 + -0.6 5,431,062 + -1.0 5,431,062 + +0.4 5,431,063 - +1.0 5,431,063 - -0.6 5,431,063 - -0.6 5,431,078 + +1.0 5,431,079 - -1.3 5,431,086 - +1.0 5,431,124 + -0.3 5,431,125 - +1.0 5,431,125 - -0.3 5,431,148 - +0.0 5,431,160 - +1.0 5,431,160 - +1.0 5,431,160 - +0.0 5,431,176 + +1.0 5,431,176 + +0.0 5,431,176 + -1.6 5,431,176 + +1.0 5,431,176 + -0.9 5,431,177 - -0.2 5,431,177 - -1.7 5,431,177 - +1.0 5,431,206 + +1.0 5,431,207 - +0.4 5,431,207 - -0.6 5,431,231 + +1.0 5,431,449 + Pf6N2E2_4698 0.75 -0.3 5,431,449 + Pf6N2E2_4698 0.75 +1.0 5,431,449 + Pf6N2E2_4698 0.75 +0.3 5,431,449 + Pf6N2E2_4698 0.75 -1.1 5,431,449 + Pf6N2E2_4698 0.75 -0.5 5,431,449 + Pf6N2E2_4698 0.75 +1.0 5,431,449 + Pf6N2E2_4698 0.75 -0.1 5,431,449 + Pf6N2E2_4698 0.75 +1.0 5,431,449 + Pf6N2E2_4698 0.75 +0.0 5,431,449 + Pf6N2E2_4698 0.75 +0.5 5,431,449 + Pf6N2E2_4698 0.75 -1.8 5,431,450 - Pf6N2E2_4698 0.75 -0.4 5,431,450 - Pf6N2E2_4698 0.75 +0.0 5,431,450 - Pf6N2E2_4698 0.75 -0.1 5,431,450 - Pf6N2E2_4698 0.75 +1.0 5,431,450 - Pf6N2E2_4698 0.75 +1.0 5,431,458 + Pf6N2E2_4698 0.77 +0.0 5,431,511 - -0.6 5,431,516 + +1.0 5,431,516 + +0.0 5,431,516 + +1.0 5,431,516 + +0.0 5,431,516 + +2.0 5,431,516 + -1.4 5,431,517 - +1.0 5,431,517 - +1.0 5,431,517 - -0.6 5,431,517 - +0.0 5,431,517 - +0.0 5,431,517 - +1.0 5,431,517 - -0.2 5,431,517 - +1.0 5,431,517 - -0.4 5,431,517 - -0.3 5,431,573 + -1.3 5,431,576 - -0.6 5,431,677 + Pf6N2E2_4699 0.11 +1.0 5,431,678 - Pf6N2E2_4699 0.11 +0.0 5,431,678 - Pf6N2E2_4699 0.11 -1.8 5,431,678 - Pf6N2E2_4699 0.11 +1.0 5,431,711 + Pf6N2E2_4699 0.20 -0.5 5,431,711 + Pf6N2E2_4699 0.20 -1.8 5,431,712 - Pf6N2E2_4699 0.20 -1.6 5,431,712 - Pf6N2E2_4699 0.20 -0.6 5,431,913 - Pf6N2E2_4699 0.70 -0.3 5,432,127 + -1.5 5,432,127 + -0.5 5,432,127 + -0.4 5,432,128 - +1.0 5,432,203 + +1.0 5,432,203 + +0.0 5,432,203 + +1.0 5,432,203 + +1.0 5,432,203 + +1.0 5,432,203 + +0.0 5,432,204 - +1.0 5,432,204 - +1.0 5,432,204 - +1.0 5,432,204 - -0.6 5,432,204 - +1.6 5,432,577 + Pf6N2E2_4700 0.32 -1.0 5,432,625 + Pf6N2E2_4700 0.37 -0.6 5,432,625 + Pf6N2E2_4700 0.37 +1.0 5,432,658 + Pf6N2E2_4700 0.40 +1.0 5,432,659 - Pf6N2E2_4700 0.40 -0.6 5,432,799 + Pf6N2E2_4700 0.54 -1.0 5,432,800 - Pf6N2E2_4700 0.54 +0.0 5,432,968 - Pf6N2E2_4700 0.72 +1.0
Or see this region's nucleotide sequence