Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2988

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,481,310	-				+0.9
3,481,310	-				+0.9
3,481,310	-				-0.1
3,481,310	-				-0.1
3,481,320	-				-0.1
3,481,320	-				+0.9
3,481,330	+				-1.6
3,481,331	-				-0.1
3,481,418	+		Pf6N2E2_2987	0.13	-1.0
3,481,419	-		Pf6N2E2_2987	0.13	-0.6
3,481,419	-		Pf6N2E2_2987	0.13	+0.9
3,481,419	-		Pf6N2E2_2987	0.13	+0.9
3,481,442	+		Pf6N2E2_2987	0.17	+0.9
3,481,443	-		Pf6N2E2_2987	0.17	-0.1
3,481,443	-		Pf6N2E2_2987	0.17	+0.9
3,481,601	+		Pf6N2E2_2987	0.38	-1.2
3,481,601	+		Pf6N2E2_2987	0.38	+0.9
3,481,602	-		Pf6N2E2_2987	0.38	+1.9
3,481,611	+		Pf6N2E2_2987	0.39	+0.9
3,481,718	+		Pf6N2E2_2987	0.53	-0.2
3,481,719	-		Pf6N2E2_2987	0.53	+0.9
3,481,719	-		Pf6N2E2_2987	0.53	-0.6
3,481,739	+		Pf6N2E2_2987	0.56	+0.9
3,481,739	+		Pf6N2E2_2987	0.56	-0.8
3,481,739	+		Pf6N2E2_2987	0.56	+0.9
3,481,740	-		Pf6N2E2_2987	0.56	-0.5
3,481,740	-		Pf6N2E2_2987	0.56	+0.9
3,482,121	+				+0.9
3,482,136	+				+0.9
3,482,136	+				+0.9
3,482,177	+				-0.1
3,482,178	-				+0.9
3,482,179	+				-0.1
3,482,179	+				+0.9
3,482,179	+				+0.9
3,482,180	-				-1.1
3,482,261	-				-0.1
3,482,269	+				-0.1
3,482,369	-		Pf6N2E2_2988	0.28	+0.9
3,482,417	+		Pf6N2E2_2988	0.40	-0.1
3,482,418	-		Pf6N2E2_2988	0.40	-0.6
3,482,418	-		Pf6N2E2_2988	0.40	+0.9
3,482,419	+		Pf6N2E2_2988	0.40	+0.9
3,482,419	+		Pf6N2E2_2988	0.40	-1.4
3,482,419	+		Pf6N2E2_2988	0.40	-1.1
3,482,420	-		Pf6N2E2_2988	0.40	+0.9
3,482,420	-		Pf6N2E2_2988	0.40	-0.6
3,482,505	-		Pf6N2E2_2988	0.61	-0.1
3,482,505	-		Pf6N2E2_2988	0.61	-0.6
3,482,505	-		Pf6N2E2_2988	0.61	-0.6
3,482,522	-		Pf6N2E2_2988	0.65	-0.1
3,482,579	+		Pf6N2E2_2988	0.78	+0.9
3,482,596	+		Pf6N2E2_2988	0.82	+0.9
3,482,669	+				+0.9
3,482,669	+				-0.6
3,482,669	+				+0.9
3,482,669	+				+0.9
3,482,669	+				-0.1
3,482,670	-				-0.5
3,482,670	-				+0.9
3,482,670	-				-0.6
3,482,670	-				-0.6
3,482,670	-				+0.9
3,482,670	-				+0.9
3,482,670	-				-0.5
3,482,829	+				-1.0
3,482,829	+				-0.6
3,482,829	+				-0.0
3,482,830	-				-0.0
3,482,830	-				+1.0
3,482,830	-				+1.0
3,482,830	-				-1.6
3,482,830	-				-0.0
3,482,830	-				-0.6
3,482,830	-				-0.2
3,482,830	-				-0.0
3,482,956	+				-0.2
3,482,956	+				+0.1
3,482,957	-				+1.0
3,482,957	-				-0.6
3,483,018	+		Pf6N2E2_2990	0.52	+1.0
3,483,018	+		Pf6N2E2_2990	0.52	-0.0
3,483,018	+		Pf6N2E2_2990	0.52	-0.7
3,483,019	-		Pf6N2E2_2990	0.53	-0.6
3,483,019	-		Pf6N2E2_2990	0.53	-0.5
3,483,019	-		Pf6N2E2_2990	0.53	+1.0
3,483,019	-		Pf6N2E2_2990	0.53	+1.2
3,483,019	-		Pf6N2E2_2990	0.53	-1.0
3,483,019	-		Pf6N2E2_2990	0.53	+0.4
3,483,019	-		Pf6N2E2_2990	0.53	+1.2
3,483,019	-		Pf6N2E2_2990	0.53	-0.3
3,483,019	-		Pf6N2E2_2990	0.53	-0.6
3,483,019	-		Pf6N2E2_2990	0.53	+0.2
3,483,019	-		Pf6N2E2_2990	0.53	-1.4
3,483,019	-		Pf6N2E2_2990	0.53	-0.0
3,483,085	+				-0.6
3,483,085	+				-0.0
3,483,085	+				+0.5
3,483,085	+				+1.0
3,483,086	-				+1.0
3,483,086	-				+1.0
3,483,096	+				+1.0
3,483,096	+				+1.0
3,483,096	+				+1.0
3,483,096	+				-0.0
3,483,096	+				+1.0
3,483,097	-				+2.5
3,483,097	-				-0.2
3,483,097	-				+1.0
3,483,097	-				-0.3
3,483,103	-				-0.0
3,483,105	+				+1.0
3,483,105	+				-0.0
3,483,316	+				-0.6
3,483,316	+				+1.0
3,483,316	+				+1.0
3,483,339	+				+1.0
3,483,340	-				+1.0
3,483,454	-		Pf6N2E2_2991	0.11	+1.0
3,483,526	+		Pf6N2E2_2991	0.17	-0.3
3,483,526	+		Pf6N2E2_2991	0.17	-0.2
3,483,526	+		Pf6N2E2_2991	0.17	-0.0
3,483,526	+		Pf6N2E2_2991	0.17	+1.1
3,483,526	+		Pf6N2E2_2991	0.17	-0.5
3,483,527	-		Pf6N2E2_2991	0.17	-0.3
3,483,527	-		Pf6N2E2_2991	0.17	+1.0
3,483,527	-		Pf6N2E2_2991	0.17	+1.0
3,483,636	+		Pf6N2E2_2991	0.27	-0.0
3,483,637	-		Pf6N2E2_2991	0.27	+1.0
3,483,637	-		Pf6N2E2_2991	0.27	-0.6
3,483,637	-		Pf6N2E2_2991	0.27	+1.0