Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5501

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5500 and Pf6N2E2_5501 overlap by 4 nucleotidesPf6N2E2_5501 and Pf6N2E2_5502 overlap by 4 nucleotides Pf6N2E2_5500 - MoxR-like ATPases, at 6,317,788 to 6,318,792 _5500 Pf6N2E2_5501 - FIG00955538: hypothetical protein, at 6,318,789 to 6,319,952 _5501 Pf6N2E2_5502 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 6,319,949 to 6,321,493 _5502 Position (kb) 6318 6319 6320Strain fitness (log2 ratio) -1 0 1at 6318.049 kb on + strand, within Pf6N2E2_5500at 6318.050 kb on - strand, within Pf6N2E2_5500at 6318.276 kb on - strand, within Pf6N2E2_5500at 6318.491 kb on + strand, within Pf6N2E2_5500at 6318.491 kb on + strand, within Pf6N2E2_5500at 6318.771 kb on + strandat 6318.792 kb on + strandat 6318.793 kb on - strandat 6318.921 kb on + strand, within Pf6N2E2_5501at 6318.922 kb on - strand, within Pf6N2E2_5501at 6318.922 kb on - strand, within Pf6N2E2_5501at 6319.015 kb on + strand, within Pf6N2E2_5501at 6319.015 kb on + strand, within Pf6N2E2_5501at 6319.183 kb on + strand, within Pf6N2E2_5501at 6319.184 kb on - strand, within Pf6N2E2_5501at 6319.258 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.474 kb on + strand, within Pf6N2E2_5501at 6319.474 kb on + strand, within Pf6N2E2_5501at 6319.810 kb on + strand, within Pf6N2E2_5501at 6319.810 kb on + strand, within Pf6N2E2_5501at 6319.810 kb on + strand, within Pf6N2E2_5501at 6319.861 kb on + strandat 6319.861 kb on + strandat 6319.862 kb on - strandat 6319.879 kb on + strandat 6319.880 kb on - strandat 6319.880 kb on - strandat 6319.885 kb on + strandat 6319.885 kb on + strandat 6319.886 kb on - strandat 6319.886 kb on - strandat 6320.034 kb on + strandat 6320.818 kb on - strand, within Pf6N2E2_5502at 6320.841 kb on + strand, within Pf6N2E2_5502at 6320.841 kb on + strand, within Pf6N2E2_5502at 6320.842 kb on - strand, within Pf6N2E2_5502at 6320.842 kb on - strand, within Pf6N2E2_5502

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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6,318,049 + Pf6N2E2_5500 0.26 +1.0
6,318,050 - Pf6N2E2_5500 0.26 +1.0
6,318,276 - Pf6N2E2_5500 0.49 -0.6
6,318,491 + Pf6N2E2_5500 0.70 +1.0
6,318,491 + Pf6N2E2_5500 0.70 -0.0
6,318,771 + +1.0
6,318,792 + -0.0
6,318,793 - +1.0
6,318,921 + Pf6N2E2_5501 0.11 -0.9
6,318,922 - Pf6N2E2_5501 0.11 -0.6
6,318,922 - Pf6N2E2_5501 0.11 +1.0
6,319,015 + Pf6N2E2_5501 0.19 -1.4
6,319,015 + Pf6N2E2_5501 0.19 -0.6
6,319,183 + Pf6N2E2_5501 0.34 -0.0
6,319,184 - Pf6N2E2_5501 0.34 -0.0
6,319,258 + Pf6N2E2_5501 0.40 -0.6
6,319,282 + Pf6N2E2_5501 0.42 -0.0
6,319,282 + Pf6N2E2_5501 0.42 -0.5
6,319,282 + Pf6N2E2_5501 0.42 +1.0
6,319,447 + Pf6N2E2_5501 0.57 -0.0
6,319,447 + Pf6N2E2_5501 0.57 -0.0
6,319,447 + Pf6N2E2_5501 0.57 -0.0
6,319,447 + Pf6N2E2_5501 0.57 +1.0
6,319,448 - Pf6N2E2_5501 0.57 -0.0
6,319,448 - Pf6N2E2_5501 0.57 +1.0
6,319,448 - Pf6N2E2_5501 0.57 -1.6
6,319,448 - Pf6N2E2_5501 0.57 +1.0
6,319,448 - Pf6N2E2_5501 0.57 -0.0
6,319,448 - Pf6N2E2_5501 0.57 +1.0
6,319,474 + Pf6N2E2_5501 0.59 +1.0
6,319,474 + Pf6N2E2_5501 0.59 -0.3
6,319,810 + Pf6N2E2_5501 0.88 -1.3
6,319,810 + Pf6N2E2_5501 0.88 -0.8
6,319,810 + Pf6N2E2_5501 0.88 -0.0
6,319,861 + -0.0
6,319,861 + -1.6
6,319,862 - +1.0
6,319,879 + +1.0
6,319,880 - -0.0
6,319,880 - -0.6
6,319,885 + +0.7
6,319,885 + +1.0
6,319,886 - +1.0
6,319,886 - +1.0
6,320,034 + -0.6
6,320,818 - Pf6N2E2_5502 0.56 -0.4
6,320,841 + Pf6N2E2_5502 0.58 +1.0
6,320,841 + Pf6N2E2_5502 0.58 -1.0
6,320,842 - Pf6N2E2_5502 0.58 +1.0
6,320,842 - Pf6N2E2_5502 0.58 +1.0

Or see this region's nucleotide sequence