Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5366

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5365 and Pf6N2E2_5366 overlap by 14 nucleotidesPf6N2E2_5366 and Pf6N2E2_5367 are separated by 9 nucleotides Pf6N2E2_5365 - Heavy metal sensor histidine kinase, at 6,163,226 to 6,164,593 _5365 Pf6N2E2_5366 - DNA-binding heavy metal response regulator, at 6,164,580 to 6,165,263 _5366 Pf6N2E2_5367 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 6,165,273 to 6,168,389 _5367 Position (kb) 6164 6165 6166Strain fitness (log2 ratio) -2 -1 0 1 2at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.777 kb on - strand, within Pf6N2E2_5365at 6163.777 kb on - strand, within Pf6N2E2_5365at 6163.890 kb on + strand, within Pf6N2E2_5365at 6163.890 kb on + strand, within Pf6N2E2_5365at 6163.890 kb on + strand, within Pf6N2E2_5365at 6164.213 kb on + strand, within Pf6N2E2_5365at 6164.446 kb on - strand, within Pf6N2E2_5365at 6164.446 kb on - strand, within Pf6N2E2_5365at 6164.502 kb on + strandat 6164.503 kb on - strandat 6164.503 kb on - strandat 6164.505 kb on - strandat 6164.505 kb on - strandat 6164.505 kb on - strandat 6164.505 kb on - strandat 6164.614 kb on + strandat 6164.615 kb on - strandat 6164.615 kb on - strandat 6164.615 kb on - strandat 6164.974 kb on + strand, within Pf6N2E2_5366at 6164.974 kb on + strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6165.078 kb on + strand, within Pf6N2E2_5366at 6165.079 kb on - strand, within Pf6N2E2_5366at 6165.131 kb on - strand, within Pf6N2E2_5366at 6165.189 kb on - strand, within Pf6N2E2_5366at 6165.190 kb on + strand, within Pf6N2E2_5366at 6165.190 kb on + strand, within Pf6N2E2_5366at 6165.190 kb on + strand, within Pf6N2E2_5366at 6165.220 kb on + strandat 6165.221 kb on - strandat 6165.221 kb on - strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.360 kb on + strandat 6165.360 kb on + strandat 6165.360 kb on + strandat 6165.361 kb on - strandat 6165.361 kb on - strandat 6165.760 kb on + strand, within Pf6N2E2_5367at 6165.760 kb on + strand, within Pf6N2E2_5367at 6165.781 kb on + strand, within Pf6N2E2_5367at 6165.781 kb on + strand, within Pf6N2E2_5367at 6165.781 kb on + strand, within Pf6N2E2_5367at 6165.781 kb on + strand, within Pf6N2E2_5367at 6165.781 kb on + strand, within Pf6N2E2_5367at 6165.782 kb on - strand, within Pf6N2E2_5367at 6165.782 kb on - strand, within Pf6N2E2_5367at 6165.782 kb on - strand, within Pf6N2E2_5367at 6165.782 kb on - strand, within Pf6N2E2_5367at 6165.782 kb on - strand, within Pf6N2E2_5367at 6165.782 kb on - strand, within Pf6N2E2_5367at 6165.782 kb on - strand, within Pf6N2E2_5367at 6166.079 kb on - strand, within Pf6N2E2_5367at 6166.085 kb on - strand, within Pf6N2E2_5367at 6166.141 kb on + strand, within Pf6N2E2_5367at 6166.141 kb on + strand, within Pf6N2E2_5367at 6166.142 kb on - strand, within Pf6N2E2_5367at 6166.195 kb on + strand, within Pf6N2E2_5367at 6166.195 kb on + strand, within Pf6N2E2_5367

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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6,163,776 + Pf6N2E2_5365 0.40 -0.6
6,163,776 + Pf6N2E2_5365 0.40 +1.0
6,163,776 + Pf6N2E2_5365 0.40 -0.6
6,163,776 + Pf6N2E2_5365 0.40 -0.3
6,163,776 + Pf6N2E2_5365 0.40 -0.0
6,163,776 + Pf6N2E2_5365 0.40 -0.0
6,163,777 - Pf6N2E2_5365 0.40 -1.6
6,163,777 - Pf6N2E2_5365 0.40 -0.0
6,163,890 + Pf6N2E2_5365 0.49 -0.0
6,163,890 + Pf6N2E2_5365 0.49 -0.6
6,163,890 + Pf6N2E2_5365 0.49 +1.0
6,164,213 + Pf6N2E2_5365 0.72 +1.0
6,164,446 - Pf6N2E2_5365 0.89 +1.0
6,164,446 - Pf6N2E2_5365 0.89 -1.0
6,164,502 + -0.9
6,164,503 - +1.0
6,164,503 - +1.0
6,164,505 - +1.0
6,164,505 - +1.0
6,164,505 - -1.6
6,164,505 - -0.3
6,164,614 + +1.0
6,164,615 - -0.5
6,164,615 - +1.0
6,164,615 - +1.6
6,164,974 + Pf6N2E2_5366 0.58 -1.3
6,164,974 + Pf6N2E2_5366 0.58 +1.0
6,164,975 - Pf6N2E2_5366 0.58 +1.0
6,164,975 - Pf6N2E2_5366 0.58 +1.0
6,164,975 - Pf6N2E2_5366 0.58 -0.0
6,164,975 - Pf6N2E2_5366 0.58 -0.0
6,165,078 + Pf6N2E2_5366 0.73 -1.8
6,165,079 - Pf6N2E2_5366 0.73 +1.0
6,165,131 - Pf6N2E2_5366 0.81 -1.0
6,165,189 - Pf6N2E2_5366 0.89 -0.0
6,165,190 + Pf6N2E2_5366 0.89 -1.0
6,165,190 + Pf6N2E2_5366 0.89 -0.0
6,165,190 + Pf6N2E2_5366 0.89 -0.6
6,165,220 + -0.6
6,165,221 - -0.2
6,165,221 - +1.0
6,165,358 + -0.8
6,165,358 + +1.0
6,165,358 + +2.0
6,165,358 + +1.0
6,165,358 + +1.0
6,165,358 + +1.0
6,165,358 + -0.0
6,165,358 + -1.0
6,165,358 + +0.4
6,165,358 + +1.0
6,165,358 + -0.0
6,165,358 + -0.0
6,165,358 + +1.0
6,165,358 + +0.4
6,165,358 + +1.0
6,165,358 + -1.3
6,165,358 + -0.6
6,165,359 - -0.9
6,165,359 - +1.0
6,165,359 - -0.5
6,165,359 - -0.0
6,165,359 - -0.6
6,165,359 - -0.6
6,165,359 - -0.0
6,165,359 - -0.0
6,165,359 - -0.0
6,165,359 - -0.7
6,165,359 - +1.0
6,165,359 - -0.0
6,165,359 - -0.6
6,165,359 - +1.0
6,165,359 - +1.0
6,165,359 - -1.6
6,165,359 - +1.0
6,165,359 - +0.6
6,165,360 + -0.0
6,165,360 + +1.0
6,165,360 + -0.0
6,165,361 - -1.0
6,165,361 - +1.0
6,165,760 + Pf6N2E2_5367 0.16 -1.3
6,165,760 + Pf6N2E2_5367 0.16 -0.0
6,165,781 + Pf6N2E2_5367 0.16 -0.0
6,165,781 + Pf6N2E2_5367 0.16 +1.1
6,165,781 + Pf6N2E2_5367 0.16 -0.2
6,165,781 + Pf6N2E2_5367 0.16 +1.0
6,165,781 + Pf6N2E2_5367 0.16 -0.7
6,165,782 - Pf6N2E2_5367 0.16 +1.0
6,165,782 - Pf6N2E2_5367 0.16 -0.6
6,165,782 - Pf6N2E2_5367 0.16 +1.0
6,165,782 - Pf6N2E2_5367 0.16 -1.0
6,165,782 - Pf6N2E2_5367 0.16 -0.0
6,165,782 - Pf6N2E2_5367 0.16 -0.1
6,165,782 - Pf6N2E2_5367 0.16 -0.6
6,166,079 - Pf6N2E2_5367 0.26 -0.0
6,166,085 - Pf6N2E2_5367 0.26 +1.0
6,166,141 + Pf6N2E2_5367 0.28 -0.0
6,166,141 + Pf6N2E2_5367 0.28 +1.0
6,166,142 - Pf6N2E2_5367 0.28 -1.3
6,166,195 + Pf6N2E2_5367 0.30 -1.3
6,166,195 + Pf6N2E2_5367 0.30 +1.0

Or see this region's nucleotide sequence