Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5365 and Pf6N2E2_5366 overlap by 14 nucleotides Pf6N2E2_5366 and Pf6N2E2_5367 are separated by 9 nucleotides
Pf6N2E2_5365 - Heavy metal sensor histidine kinase, at 6,163,226 to 6,164,593
_5365
Pf6N2E2_5366 - DNA-binding heavy metal response regulator, at 6,164,580 to 6,165,263
_5366
Pf6N2E2_5367 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 6,165,273 to 6,168,389
_5367
Position (kb)
6164
6165
6166 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.777 kb on - strand, within Pf6N2E2_5365 at 6163.777 kb on - strand, within Pf6N2E2_5365 at 6163.890 kb on + strand, within Pf6N2E2_5365 at 6163.890 kb on + strand, within Pf6N2E2_5365 at 6163.890 kb on + strand, within Pf6N2E2_5365 at 6164.213 kb on + strand, within Pf6N2E2_5365 at 6164.446 kb on - strand, within Pf6N2E2_5365 at 6164.446 kb on - strand, within Pf6N2E2_5365 at 6164.502 kb on + strand at 6164.503 kb on - strand at 6164.503 kb on - strand at 6164.505 kb on - strand at 6164.505 kb on - strand at 6164.505 kb on - strand at 6164.505 kb on - strand at 6164.614 kb on + strand at 6164.615 kb on - strand at 6164.615 kb on - strand at 6164.615 kb on - strand at 6164.974 kb on + strand, within Pf6N2E2_5366 at 6164.974 kb on + strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6165.078 kb on + strand, within Pf6N2E2_5366 at 6165.079 kb on - strand, within Pf6N2E2_5366 at 6165.131 kb on - strand, within Pf6N2E2_5366 at 6165.189 kb on - strand, within Pf6N2E2_5366 at 6165.190 kb on + strand, within Pf6N2E2_5366 at 6165.190 kb on + strand, within Pf6N2E2_5366 at 6165.190 kb on + strand, within Pf6N2E2_5366 at 6165.220 kb on + strand at 6165.221 kb on - strand at 6165.221 kb on - strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.360 kb on + strand at 6165.360 kb on + strand at 6165.360 kb on + strand at 6165.361 kb on - strand at 6165.361 kb on - strand at 6165.760 kb on + strand, within Pf6N2E2_5367 at 6165.760 kb on + strand, within Pf6N2E2_5367 at 6165.781 kb on + strand, within Pf6N2E2_5367 at 6165.781 kb on + strand, within Pf6N2E2_5367 at 6165.781 kb on + strand, within Pf6N2E2_5367 at 6165.781 kb on + strand, within Pf6N2E2_5367 at 6165.781 kb on + strand, within Pf6N2E2_5367 at 6165.782 kb on - strand, within Pf6N2E2_5367 at 6165.782 kb on - strand, within Pf6N2E2_5367 at 6165.782 kb on - strand, within Pf6N2E2_5367 at 6165.782 kb on - strand, within Pf6N2E2_5367 at 6165.782 kb on - strand, within Pf6N2E2_5367 at 6165.782 kb on - strand, within Pf6N2E2_5367 at 6165.782 kb on - strand, within Pf6N2E2_5367 at 6166.079 kb on - strand, within Pf6N2E2_5367 at 6166.085 kb on - strand, within Pf6N2E2_5367 at 6166.141 kb on + strand, within Pf6N2E2_5367 at 6166.141 kb on + strand, within Pf6N2E2_5367 at 6166.142 kb on - strand, within Pf6N2E2_5367 at 6166.195 kb on + strand, within Pf6N2E2_5367 at 6166.195 kb on + strand, within Pf6N2E2_5367
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 6,163,776 + Pf6N2E2_5365 0.40 -0.6 6,163,776 + Pf6N2E2_5365 0.40 +1.0 6,163,776 + Pf6N2E2_5365 0.40 -0.6 6,163,776 + Pf6N2E2_5365 0.40 -0.3 6,163,776 + Pf6N2E2_5365 0.40 -0.0 6,163,776 + Pf6N2E2_5365 0.40 -0.0 6,163,777 - Pf6N2E2_5365 0.40 -1.6 6,163,777 - Pf6N2E2_5365 0.40 -0.0 6,163,890 + Pf6N2E2_5365 0.49 -0.0 6,163,890 + Pf6N2E2_5365 0.49 -0.6 6,163,890 + Pf6N2E2_5365 0.49 +1.0 6,164,213 + Pf6N2E2_5365 0.72 +1.0 6,164,446 - Pf6N2E2_5365 0.89 +1.0 6,164,446 - Pf6N2E2_5365 0.89 -1.0 6,164,502 + -0.9 6,164,503 - +1.0 6,164,503 - +1.0 6,164,505 - +1.0 6,164,505 - +1.0 6,164,505 - -1.6 6,164,505 - -0.3 6,164,614 + +1.0 6,164,615 - -0.5 6,164,615 - +1.0 6,164,615 - +1.6 6,164,974 + Pf6N2E2_5366 0.58 -1.3 6,164,974 + Pf6N2E2_5366 0.58 +1.0 6,164,975 - Pf6N2E2_5366 0.58 +1.0 6,164,975 - Pf6N2E2_5366 0.58 +1.0 6,164,975 - Pf6N2E2_5366 0.58 -0.0 6,164,975 - Pf6N2E2_5366 0.58 -0.0 6,165,078 + Pf6N2E2_5366 0.73 -1.8 6,165,079 - Pf6N2E2_5366 0.73 +1.0 6,165,131 - Pf6N2E2_5366 0.81 -1.0 6,165,189 - Pf6N2E2_5366 0.89 -0.0 6,165,190 + Pf6N2E2_5366 0.89 -1.0 6,165,190 + Pf6N2E2_5366 0.89 -0.0 6,165,190 + Pf6N2E2_5366 0.89 -0.6 6,165,220 + -0.6 6,165,221 - -0.2 6,165,221 - +1.0 6,165,358 + -0.8 6,165,358 + +1.0 6,165,358 + +2.0 6,165,358 + +1.0 6,165,358 + +1.0 6,165,358 + +1.0 6,165,358 + -0.0 6,165,358 + -1.0 6,165,358 + +0.4 6,165,358 + +1.0 6,165,358 + -0.0 6,165,358 + -0.0 6,165,358 + +1.0 6,165,358 + +0.4 6,165,358 + +1.0 6,165,358 + -1.3 6,165,358 + -0.6 6,165,359 - -0.9 6,165,359 - +1.0 6,165,359 - -0.5 6,165,359 - -0.0 6,165,359 - -0.6 6,165,359 - -0.6 6,165,359 - -0.0 6,165,359 - -0.0 6,165,359 - -0.0 6,165,359 - -0.7 6,165,359 - +1.0 6,165,359 - -0.0 6,165,359 - -0.6 6,165,359 - +1.0 6,165,359 - +1.0 6,165,359 - -1.6 6,165,359 - +1.0 6,165,359 - +0.6 6,165,360 + -0.0 6,165,360 + +1.0 6,165,360 + -0.0 6,165,361 - -1.0 6,165,361 - +1.0 6,165,760 + Pf6N2E2_5367 0.16 -1.3 6,165,760 + Pf6N2E2_5367 0.16 -0.0 6,165,781 + Pf6N2E2_5367 0.16 -0.0 6,165,781 + Pf6N2E2_5367 0.16 +1.1 6,165,781 + Pf6N2E2_5367 0.16 -0.2 6,165,781 + Pf6N2E2_5367 0.16 +1.0 6,165,781 + Pf6N2E2_5367 0.16 -0.7 6,165,782 - Pf6N2E2_5367 0.16 +1.0 6,165,782 - Pf6N2E2_5367 0.16 -0.6 6,165,782 - Pf6N2E2_5367 0.16 +1.0 6,165,782 - Pf6N2E2_5367 0.16 -1.0 6,165,782 - Pf6N2E2_5367 0.16 -0.0 6,165,782 - Pf6N2E2_5367 0.16 -0.1 6,165,782 - Pf6N2E2_5367 0.16 -0.6 6,166,079 - Pf6N2E2_5367 0.26 -0.0 6,166,085 - Pf6N2E2_5367 0.26 +1.0 6,166,141 + Pf6N2E2_5367 0.28 -0.0 6,166,141 + Pf6N2E2_5367 0.28 +1.0 6,166,142 - Pf6N2E2_5367 0.28 -1.3 6,166,195 + Pf6N2E2_5367 0.30 -1.3 6,166,195 + Pf6N2E2_5367 0.30 +1.0
Or see this region's nucleotide sequence