Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4501 and Pf6N2E2_4502 are separated by 326 nucleotides Pf6N2E2_4502 and Pf6N2E2_4503 are separated by 88 nucleotides
Pf6N2E2_4501 - Alkyl hydroperoxide reductase subunit C-like protein, at 5,233,355 to 5,234,122
_4501
Pf6N2E2_4502 - FMN reductase (EC 1.5.1.29), at 5,234,449 to 5,235,042
_4502
Pf6N2E2_4503 - Alkanesulfonates-binding protein, at 5,235,131 to 5,236,096
_4503
Position (kb) 5234
5235
5236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5233.805 kb on + strand, within Pf6N2E2_4501 at 5233.805 kb on + strand, within Pf6N2E2_4501 at 5233.806 kb on - strand, within Pf6N2E2_4501 at 5233.806 kb on - strand, within Pf6N2E2_4501 at 5233.823 kb on - strand, within Pf6N2E2_4501 at 5233.895 kb on - strand, within Pf6N2E2_4501 at 5233.895 kb on - strand, within Pf6N2E2_4501 at 5233.898 kb on + strand, within Pf6N2E2_4501 at 5233.970 kb on + strand, within Pf6N2E2_4501 at 5233.970 kb on + strand, within Pf6N2E2_4501 at 5233.970 kb on + strand, within Pf6N2E2_4501 at 5233.970 kb on + strand, within Pf6N2E2_4501 at 5233.970 kb on + strand, within Pf6N2E2_4501 at 5233.970 kb on + strand, within Pf6N2E2_4501 at 5233.971 kb on - strand, within Pf6N2E2_4501 at 5233.971 kb on - strand, within Pf6N2E2_4501 at 5233.971 kb on - strand, within Pf6N2E2_4501 at 5233.971 kb on - strand, within Pf6N2E2_4501 at 5234.090 kb on + strand at 5234.091 kb on - strand at 5234.091 kb on - strand at 5234.255 kb on + strand at 5234.256 kb on - strand at 5234.296 kb on + strand at 5234.296 kb on + strand at 5234.297 kb on - strand at 5234.303 kb on + strand at 5234.303 kb on + strand at 5234.303 kb on + strand at 5234.304 kb on - strand at 5234.304 kb on - strand at 5234.304 kb on - strand at 5234.369 kb on - strand at 5234.382 kb on + strand at 5234.396 kb on + strand at 5234.397 kb on - strand at 5234.397 kb on - strand at 5234.434 kb on + strand at 5234.434 kb on + strand at 5234.434 kb on + strand at 5234.434 kb on + strand at 5234.434 kb on + strand at 5234.441 kb on + strand at 5234.441 kb on + strand at 5234.557 kb on + strand, within Pf6N2E2_4502 at 5234.557 kb on + strand, within Pf6N2E2_4502 at 5234.557 kb on + strand, within Pf6N2E2_4502 at 5234.557 kb on + strand, within Pf6N2E2_4502 at 5234.557 kb on + strand, within Pf6N2E2_4502 at 5234.558 kb on - strand, within Pf6N2E2_4502 at 5234.558 kb on - strand, within Pf6N2E2_4502 at 5234.558 kb on - strand, within Pf6N2E2_4502 at 5234.677 kb on + strand, within Pf6N2E2_4502 at 5234.678 kb on - strand, within Pf6N2E2_4502 at 5234.678 kb on - strand, within Pf6N2E2_4502 at 5234.711 kb on + strand, within Pf6N2E2_4502 at 5234.746 kb on - strand, within Pf6N2E2_4502 at 5234.787 kb on + strand, within Pf6N2E2_4502 at 5234.803 kb on + strand, within Pf6N2E2_4502 at 5234.804 kb on - strand, within Pf6N2E2_4502 at 5235.002 kb on + strand at 5235.069 kb on + strand at 5235.069 kb on + strand at 5235.069 kb on + strand at 5235.069 kb on + strand at 5235.070 kb on - strand at 5235.070 kb on - strand at 5235.199 kb on + strand at 5235.199 kb on + strand at 5235.200 kb on - strand at 5235.200 kb on - strand at 5235.200 kb on - strand at 5235.437 kb on + strand, within Pf6N2E2_4503 at 5235.437 kb on + strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.438 kb on - strand, within Pf6N2E2_4503 at 5235.446 kb on + strand, within Pf6N2E2_4503 at 5235.446 kb on + strand, within Pf6N2E2_4503 at 5235.447 kb on - strand, within Pf6N2E2_4503 at 5235.447 kb on - strand, within Pf6N2E2_4503 at 5235.447 kb on - strand, within Pf6N2E2_4503 at 5235.564 kb on - strand, within Pf6N2E2_4503 at 5235.564 kb on - strand, within Pf6N2E2_4503 at 5235.602 kb on + strand, within Pf6N2E2_4503 at 5235.773 kb on + strand, within Pf6N2E2_4503 at 5235.774 kb on - strand, within Pf6N2E2_4503 at 5235.792 kb on - strand, within Pf6N2E2_4503 at 5235.891 kb on + strand, within Pf6N2E2_4503 at 5236.013 kb on + strand at 5236.013 kb on + strand at 5236.013 kb on + strand at 5236.013 kb on + strand at 5236.013 kb on + strand at 5236.014 kb on - strand at 5236.014 kb on - strand at 5236.014 kb on - strand at 5236.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 5,233,805 + Pf6N2E2_4501 0.59 +0.0 5,233,805 + Pf6N2E2_4501 0.59 -1.3 5,233,806 - Pf6N2E2_4501 0.59 +1.0 5,233,806 - Pf6N2E2_4501 0.59 -0.6 5,233,823 - Pf6N2E2_4501 0.61 -0.5 5,233,895 - Pf6N2E2_4501 0.70 -1.0 5,233,895 - Pf6N2E2_4501 0.70 -0.4 5,233,898 + Pf6N2E2_4501 0.71 -1.2 5,233,970 + Pf6N2E2_4501 0.80 -1.2 5,233,970 + Pf6N2E2_4501 0.80 +0.2 5,233,970 + Pf6N2E2_4501 0.80 -0.4 5,233,970 + Pf6N2E2_4501 0.80 -0.4 5,233,970 + Pf6N2E2_4501 0.80 -2.0 5,233,970 + Pf6N2E2_4501 0.80 -0.6 5,233,971 - Pf6N2E2_4501 0.80 -0.8 5,233,971 - Pf6N2E2_4501 0.80 +0.0 5,233,971 - Pf6N2E2_4501 0.80 +0.0 5,233,971 - Pf6N2E2_4501 0.80 -0.8 5,234,090 + +1.0 5,234,091 - +0.0 5,234,091 - +1.0 5,234,255 + +1.0 5,234,256 - -2.6 5,234,296 + +1.0 5,234,296 + -1.3 5,234,297 - +1.0 5,234,303 + +2.0 5,234,303 + -0.6 5,234,303 + +0.0 5,234,304 - -2.0 5,234,304 - -0.6 5,234,304 - +0.3 5,234,369 - -0.6 5,234,382 + +0.0 5,234,396 + -1.8 5,234,397 - -0.7 5,234,397 - +1.0 5,234,434 + -0.6 5,234,434 + +0.0 5,234,434 + +1.0 5,234,434 + -0.1 5,234,434 + +1.0 5,234,441 + -1.0 5,234,441 + +0.0 5,234,557 + Pf6N2E2_4502 0.18 -0.6 5,234,557 + Pf6N2E2_4502 0.18 -1.3 5,234,557 + Pf6N2E2_4502 0.18 -1.4 5,234,557 + Pf6N2E2_4502 0.18 -0.6 5,234,557 + Pf6N2E2_4502 0.18 +0.0 5,234,558 - Pf6N2E2_4502 0.18 -1.4 5,234,558 - Pf6N2E2_4502 0.18 +1.0 5,234,558 - Pf6N2E2_4502 0.18 -0.6 5,234,677 + Pf6N2E2_4502 0.38 +1.0 5,234,678 - Pf6N2E2_4502 0.39 -0.3 5,234,678 - Pf6N2E2_4502 0.39 +1.0 5,234,711 + Pf6N2E2_4502 0.44 +0.0 5,234,746 - Pf6N2E2_4502 0.50 +1.0 5,234,787 + Pf6N2E2_4502 0.57 +1.0 5,234,803 + Pf6N2E2_4502 0.60 -0.6 5,234,804 - Pf6N2E2_4502 0.60 +1.0 5,235,002 + +1.0 5,235,069 + +0.4 5,235,069 + -0.6 5,235,069 + -0.6 5,235,069 + +1.0 5,235,070 - -0.5 5,235,070 - +0.2 5,235,199 + -1.6 5,235,199 + -1.0 5,235,200 - +1.0 5,235,200 - +0.0 5,235,200 - +0.0 5,235,437 + Pf6N2E2_4503 0.32 +0.0 5,235,437 + Pf6N2E2_4503 0.32 +0.0 5,235,438 - Pf6N2E2_4503 0.32 -0.6 5,235,438 - Pf6N2E2_4503 0.32 +0.0 5,235,438 - Pf6N2E2_4503 0.32 +0.0 5,235,438 - Pf6N2E2_4503 0.32 -0.5 5,235,438 - Pf6N2E2_4503 0.32 -0.6 5,235,438 - Pf6N2E2_4503 0.32 -1.1 5,235,438 - Pf6N2E2_4503 0.32 +0.0 5,235,438 - Pf6N2E2_4503 0.32 +1.0 5,235,438 - Pf6N2E2_4503 0.32 -0.6 5,235,438 - Pf6N2E2_4503 0.32 +1.0 5,235,446 + Pf6N2E2_4503 0.33 +1.0 5,235,446 + Pf6N2E2_4503 0.33 +1.0 5,235,447 - Pf6N2E2_4503 0.33 +1.0 5,235,447 - Pf6N2E2_4503 0.33 +0.0 5,235,447 - Pf6N2E2_4503 0.33 +1.0 5,235,564 - Pf6N2E2_4503 0.45 -1.0 5,235,564 - Pf6N2E2_4503 0.45 +1.0 5,235,602 + Pf6N2E2_4503 0.49 +1.0 5,235,773 + Pf6N2E2_4503 0.66 -0.9 5,235,774 - Pf6N2E2_4503 0.67 +1.0 5,235,792 - Pf6N2E2_4503 0.68 +1.0 5,235,891 + Pf6N2E2_4503 0.79 +1.0 5,236,013 + -0.6 5,236,013 + +1.0 5,236,013 + -0.6 5,236,013 + +1.0 5,236,013 + +1.0 5,236,014 - +1.0 5,236,014 - +1.0 5,236,014 - +0.0 5,236,014 - -1.8
Or see this region's nucleotide sequence