Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4328

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
5,050,653	+		Pf6N2E2_4327	0.83	+1.3
5,050,653	+		Pf6N2E2_4327	0.83	-1.0
5,050,654	-		Pf6N2E2_4327	0.83	+0.0
5,050,654	-		Pf6N2E2_4327	0.83	+1.0
5,050,654	-		Pf6N2E2_4327	0.83	-0.5
5,050,654	-		Pf6N2E2_4327	0.83	-0.9
5,050,654	-		Pf6N2E2_4327	0.83	-0.3
5,050,716	-		Pf6N2E2_4327	0.85	-1.0
5,050,716	-		Pf6N2E2_4327	0.85	+0.0
5,051,007	+				+1.0
5,051,007	+				+0.5
5,051,007	+				-1.0
5,051,007	+				+0.0
5,051,008	-				+0.3
5,051,058	+				+1.0
5,051,058	+				+1.0
5,051,169	+				+1.0
5,051,170	-				+1.0
5,051,170	-				-1.3
5,051,172	+				+1.0
5,051,172	+				+1.0
5,051,172	+				+0.0
5,051,172	+				+1.0
5,051,172	+				-0.5
5,051,172	+				-0.5
5,051,172	+				+0.0
5,051,173	-				-1.0
5,051,173	-				-0.3
5,051,173	-				-1.0
5,051,173	-				+1.0
5,051,173	-				+1.0
5,051,173	-				+1.0
5,051,308	+		Pf6N2E2_4328	0.20	-2.4
5,051,308	+		Pf6N2E2_4328	0.20	-0.5
5,051,309	-		Pf6N2E2_4328	0.21	-1.0
5,051,309	-		Pf6N2E2_4328	0.21	-0.5
5,051,368	+		Pf6N2E2_4328	0.26	+0.0
5,051,368	+		Pf6N2E2_4328	0.26	+0.0
5,051,369	-		Pf6N2E2_4328	0.27	-1.0
5,051,369	-		Pf6N2E2_4328	0.27	+1.0
5,051,369	-		Pf6N2E2_4328	0.27	-0.2
5,051,369	-		Pf6N2E2_4328	0.27	+1.0
5,051,515	+		Pf6N2E2_4328	0.41	+1.0
5,051,515	+		Pf6N2E2_4328	0.41	+1.0
5,051,516	-		Pf6N2E2_4328	0.41	-1.8
5,051,516	-		Pf6N2E2_4328	0.41	+1.0
5,051,545	+		Pf6N2E2_4328	0.44	+0.0
5,051,545	+		Pf6N2E2_4328	0.44	-1.3
5,051,546	-		Pf6N2E2_4328	0.44	-0.4
5,051,608	+		Pf6N2E2_4328	0.50	-0.5
5,051,608	+		Pf6N2E2_4328	0.50	+0.0
5,051,608	+		Pf6N2E2_4328	0.50	+1.0
5,051,608	+		Pf6N2E2_4328	0.50	-2.0
5,051,609	-		Pf6N2E2_4328	0.50	+0.0
5,051,609	-		Pf6N2E2_4328	0.50	+1.0
5,051,698	+		Pf6N2E2_4328	0.59	+0.0
5,051,698	+		Pf6N2E2_4328	0.59	-0.5
5,051,698	+		Pf6N2E2_4328	0.59	-1.0
5,051,699	-		Pf6N2E2_4328	0.59	+1.0
5,051,755	+		Pf6N2E2_4328	0.65	-1.5
5,051,842	+		Pf6N2E2_4328	0.74	-0.5
5,051,842	+		Pf6N2E2_4328	0.74	-0.5
5,051,843	-		Pf6N2E2_4328	0.74	+1.0
5,052,082	+				-0.5
5,052,083	-				-0.5
5,052,117	-				+0.5
5,052,181	+				-1.3
5,052,199	+				-0.4
5,052,220	-				+1.0
5,052,220	-				+1.0
5,052,220	-				-1.0
5,052,426	+		Pf6N2E2_4329	0.17	+0.4
5,052,427	-		Pf6N2E2_4329	0.17	+0.0
5,052,486	+		Pf6N2E2_4329	0.20	+1.0
5,052,486	+		Pf6N2E2_4329	0.20	-1.1
5,052,486	+		Pf6N2E2_4329	0.20	+1.0
5,052,486	+		Pf6N2E2_4329	0.20	+0.0
5,052,487	-		Pf6N2E2_4329	0.20	+0.0
5,052,487	-		Pf6N2E2_4329	0.20	+0.0
5,052,487	-		Pf6N2E2_4329	0.20	+0.0
5,052,753	+		Pf6N2E2_4329	0.34	-1.3
5,052,753	+		Pf6N2E2_4329	0.34	-0.5
5,052,754	-		Pf6N2E2_4329	0.34	+0.0
5,052,754	-		Pf6N2E2_4329	0.34	-0.5
5,052,754	-		Pf6N2E2_4329	0.34	-1.0
5,052,754	-		Pf6N2E2_4329	0.34	+0.0
5,052,819	+		Pf6N2E2_4329	0.38	-0.5
5,052,820	-		Pf6N2E2_4329	0.38	-0.5
5,052,820	-		Pf6N2E2_4329	0.38	-0.5
5,052,820	-		Pf6N2E2_4329	0.38	-0.4
5,052,820	-		Pf6N2E2_4329	0.38	-1.1
5,052,820	-		Pf6N2E2_4329	0.38	-1.3
5,052,823	-		Pf6N2E2_4329	0.38	-1.0
5,052,864	+		Pf6N2E2_4329	0.40	+1.0
5,052,864	+		Pf6N2E2_4329	0.40	-0.4
5,052,865	-		Pf6N2E2_4329	0.40	+1.0
5,052,865	-		Pf6N2E2_4329	0.40	+0.0
5,052,865	-		Pf6N2E2_4329	0.40	+0.0