Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4015

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
4,687,572	+				-0.7
4,687,572	+				-0.0
4,687,573	-				+1.0
4,687,623	+				+1.0
4,687,623	+				-0.0
4,687,623	+				+1.0
4,687,624	-				+0.7
4,687,631	+				+1.0
4,687,632	-				-0.0
4,687,692	+				-0.6
4,687,760	+				-0.6
4,687,760	+				+1.0
4,687,908	+				-0.0
4,687,908	+				-0.0
4,687,914	+				+1.0
4,688,009	+				-0.6
4,688,009	+				-0.0
4,688,009	+				+1.0
4,688,009	+				-0.2
4,688,009	+				-0.0
4,688,009	+				+1.0
4,688,009	+				+1.0
4,688,009	+				-0.6
4,688,009	+				-0.0
4,688,009	+				-0.6
4,688,009	+				+1.0
4,688,009	+				-0.0
4,688,009	+				-0.0
4,688,009	+				+1.0
4,688,009	+				+1.0
4,688,009	+				+1.0
4,688,010	-				-1.0
4,688,010	-				+1.0
4,688,010	-				-1.3
4,688,010	-				-1.0
4,688,010	-				-0.6
4,688,010	-				+1.0
4,688,010	-				+1.0
4,688,010	-				-0.6
4,688,010	-				-0.6
4,688,010	-				-0.0
4,688,010	-				-0.6
4,688,010	-				+1.0
4,688,010	-				+1.0
4,688,010	-				+1.0
4,688,056	-				-0.4
4,688,120	+				-0.6
4,688,120	+				-0.0
4,688,120	+				-0.8
4,688,120	+				+1.0
4,688,121	-				+1.0
4,688,215	-				-0.6
4,688,215	-				+0.8
4,688,215	-				-1.0
4,688,247	+				-0.0
4,688,247	+				-1.6
4,688,247	+				+1.0
4,688,248	-				-0.0
4,688,248	-				-1.0
4,688,248	-				-0.6
4,688,292	+				-0.0
4,688,292	+				+1.0
4,688,329	-				-0.5
4,688,329	-				-0.0
4,688,384	+				-0.6
4,688,384	+				-0.0
4,688,385	-				-0.3
4,688,385	-				-1.0
4,688,385	-				-0.0
4,688,385	-				-0.0
4,688,398	-		Pf6N2E2_4015	0.10	-0.6
4,688,398	-		Pf6N2E2_4015	0.10	+1.0
4,688,415	+		Pf6N2E2_4015	0.12	+1.0
4,688,415	+		Pf6N2E2_4015	0.12	-0.0
4,688,415	+		Pf6N2E2_4015	0.12	-0.6
4,688,415	+		Pf6N2E2_4015	0.12	+1.0
4,688,416	-		Pf6N2E2_4015	0.12	+1.0
4,688,418	+		Pf6N2E2_4015	0.12	+1.0
4,688,516	+		Pf6N2E2_4015	0.22	-1.8
4,688,517	-		Pf6N2E2_4015	0.22	-0.0
4,688,577	+		Pf6N2E2_4015	0.28	-0.0
4,688,577	+		Pf6N2E2_4015	0.28	-0.0
4,688,578	-		Pf6N2E2_4015	0.28	+1.0
4,688,629	+		Pf6N2E2_4015	0.33	-0.0
4,688,629	+		Pf6N2E2_4015	0.33	-0.0
4,688,630	-		Pf6N2E2_4015	0.33	-0.0
4,688,688	+		Pf6N2E2_4015	0.39	-0.6
4,688,688	+				+2.0
4,688,692	+		Pf6N2E2_4015	0.39	-0.0
4,688,693	-		Pf6N2E2_4015	0.39	+1.0
4,688,693	-		Pf6N2E2_4015	0.39	+1.0
4,688,693	-		Pf6N2E2_4015	0.39	+1.0
4,688,770	+		Pf6N2E2_4015	0.47	-0.6
4,688,770	+		Pf6N2E2_4015	0.47	-0.6
4,688,771	-		Pf6N2E2_4015	0.47	+1.0
4,688,771	-		Pf6N2E2_4015	0.47	-0.6
4,688,771	-		Pf6N2E2_4015	0.47	+0.4
4,688,774	+		Pf6N2E2_4015	0.48	+1.0
4,688,774	+		Pf6N2E2_4015	0.48	-1.3
4,688,774	+		Pf6N2E2_4015	0.48	-0.0
4,688,775	-		Pf6N2E2_4015	0.48	-0.0
4,688,775	-		Pf6N2E2_4015	0.48	-0.0
4,688,813	+		Pf6N2E2_4015	0.51	+1.0
4,688,813	+		Pf6N2E2_4015	0.51	-0.6
4,688,825	+		Pf6N2E2_4015	0.53	-0.0
4,688,826	-		Pf6N2E2_4015	0.53	-0.0
4,688,935	+		Pf6N2E2_4015	0.63	-0.0
4,688,935	+		Pf6N2E2_4015	0.63	-0.6
4,688,935	+		Pf6N2E2_4015	0.63	-0.3
4,688,946	+		Pf6N2E2_4015	0.65	-0.0
4,688,997	+		Pf6N2E2_4015	0.70	+1.0
4,688,998	-		Pf6N2E2_4015	0.70	-0.5
4,689,010	+		Pf6N2E2_4015	0.71	-0.0
4,689,010	+		Pf6N2E2_4015	0.71	+1.0
4,689,011	-		Pf6N2E2_4015	0.71	+1.0
4,689,011	-		Pf6N2E2_4015	0.71	-0.0
4,689,023	+		Pf6N2E2_4015	0.72	-0.0
4,689,023	+		Pf6N2E2_4015	0.72	-0.0
4,689,023	+		Pf6N2E2_4015	0.72	-0.6
4,689,024	-		Pf6N2E2_4015	0.72	-0.0
4,689,024	-		Pf6N2E2_4015	0.72	-0.0
4,689,024	-		Pf6N2E2_4015	0.72	+1.0
4,689,024	-		Pf6N2E2_4015	0.72	-1.3
4,689,024	-		Pf6N2E2_4015	0.72	-0.0
4,689,047	-		Pf6N2E2_4015	0.75	-0.3
4,689,074	-		Pf6N2E2_4015	0.77	-1.3
4,689,091	+		Pf6N2E2_4015	0.79	+1.0
4,689,091	+		Pf6N2E2_4015	0.79	+1.0
4,689,091	+		Pf6N2E2_4015	0.79	-0.6
4,689,092	-		Pf6N2E2_4015	0.79	-0.0
4,689,275	+				-0.0
4,689,275	+				-0.5
4,689,320	+				-0.0
4,689,321	-				+1.0
4,689,321	-				+1.0
4,689,339	-				-0.3
4,689,339	-				-0.0
4,689,386	+				-0.0
4,689,386	+				+1.0
4,689,386	+				+1.0
4,689,386	+				+0.2
4,689,386	+				-0.3
4,689,386	+				-0.6
4,689,387	-				+0.7
4,689,387	-				+0.8
4,689,387	-				+1.0
4,689,387	-				+1.0
4,689,388	+				+0.4
4,689,388	+				-0.6
4,689,388	+				-0.6
4,689,389	-				+1.0
4,689,389	-				+1.0
4,689,389	-				+1.0
4,689,389	-				-0.2
4,689,453	+				+1.0
4,689,453	+				-0.0
4,689,454	-				-0.6
4,689,454	-				+1.0
4,689,454	-				-0.8
4,689,454	-				+0.4
4,689,605	+				-0.6
4,689,606	-				-1.3
4,689,622	+				-0.0
4,689,669	+				+1.0
4,689,670	-				+0.1
4,689,670	-				-1.0
4,689,732	-				-0.3
4,689,927	+				+1.0
4,689,927	+				+0.2
4,689,927	+				-0.6
4,689,927	+				-0.4
4,689,928	-				+1.0
4,689,928	-				-0.6
4,689,928	-				-0.8
4,689,932	+				-0.3
4,689,932	+				-0.6
4,689,932	+				-0.0
4,689,933	-				-0.0
4,689,933	-				-0.2
4,689,933	-				+1.0
4,689,933	-				+1.0
4,689,933	-				+1.2
4,689,933	-				-0.6
4,689,951	+				+1.0
4,689,951	+				-0.3
4,689,951	+				-0.6
4,689,951	+				-0.6
4,689,952	-				-0.2
4,689,952	-				+0.3
4,689,966	+				-0.6
4,689,967	-				+1.0
4,689,986	+				+1.0
4,689,986	+				+1.0
4,689,987	-				-0.6
4,689,987	-				-0.0
4,689,987	-				+0.3
4,689,992	+				+0.2
4,690,003	+				+1.0
4,690,103	+				-1.0
4,690,104	-				-0.3
4,690,106	+				-0.0
4,690,106	+				-0.6
4,690,106	+				+1.0
4,690,107	-				-0.0
4,690,107	-				+1.0
4,690,107	-				-0.7
4,690,110	+				+1.0
4,690,110	+				-0.0
4,690,110	+				+1.0
4,690,110	+				-0.0
4,690,110	+				+1.0
4,690,110	+				-0.2
4,690,111	-				+1.0
4,690,111	-				-0.6
4,690,111	-				-0.6
4,690,116	+				-1.3
4,690,117	-				-0.1
4,690,141	+				-0.0
4,690,141	+				+1.0
4,690,141	+				-0.3
4,690,142	-				+1.0
4,690,142	-				-1.0
4,690,148	+		Pf6N2E2_4016	0.12	-0.0
4,690,148	+		Pf6N2E2_4016	0.12	-1.3
4,690,149	-		Pf6N2E2_4016	0.12	-0.0
4,690,149	-		Pf6N2E2_4016	0.12	-0.0
4,690,179	-		Pf6N2E2_4016	0.23	+1.0
4,690,179	-		Pf6N2E2_4016	0.23	-0.6
4,690,188	+		Pf6N2E2_4016	0.27	-0.6
4,690,201	+		Pf6N2E2_4016	0.32	+1.0
4,690,201	+		Pf6N2E2_4016	0.32	-0.6
4,690,209	+		Pf6N2E2_4016	0.34	+1.0
4,690,209	+		Pf6N2E2_4016	0.34	+1.0