Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3297

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,803,134	+		Pf6N2E2_3296	0.38	+1.0
3,803,135	-		Pf6N2E2_3296	0.38	-2.9
3,803,135	-		Pf6N2E2_3296	0.38	+1.0
3,803,135	-		Pf6N2E2_3296	0.38	+1.0
3,803,135	-		Pf6N2E2_3296	0.38	-0.0
3,803,135	-		Pf6N2E2_3296	0.38	-0.5
3,803,398	+		Pf6N2E2_3296	0.55	-1.1
3,803,548	+		Pf6N2E2_3296	0.64	+1.0
3,803,548	+		Pf6N2E2_3296	0.64	-1.4
3,803,548	+		Pf6N2E2_3296	0.64	-0.6
3,803,548	+		Pf6N2E2_3296	0.64	+1.0
3,803,549	-		Pf6N2E2_3296	0.64	-1.0
3,803,549	-		Pf6N2E2_3296	0.64	-1.0
3,803,549	-		Pf6N2E2_3296	0.64	+1.0
3,803,549	-		Pf6N2E2_3296	0.64	-0.6
3,803,549	-		Pf6N2E2_3296	0.64	-0.0
3,803,549	-		Pf6N2E2_3296	0.64	-1.0
3,803,549	-		Pf6N2E2_3296	0.64	+1.0
3,803,584	+		Pf6N2E2_3296	0.66	-0.6
3,803,584	+		Pf6N2E2_3296	0.66	-0.0
3,803,585	-		Pf6N2E2_3296	0.67	-0.0
3,803,585	-		Pf6N2E2_3296	0.67	-0.4
3,803,623	+		Pf6N2E2_3296	0.69	-0.6
3,803,761	+		Pf6N2E2_3296	0.78	-0.5
3,803,936	+		Pf6N2E2_3296	0.89	+1.0
3,803,936	+		Pf6N2E2_3296	0.89	+1.0
3,803,936	+		Pf6N2E2_3296	0.89	-0.6
3,803,937	-		Pf6N2E2_3296	0.89	-0.7
3,803,937	-		Pf6N2E2_3296	0.89	-0.0
3,804,070	+				-1.0
3,804,070	+				+2.0
3,804,070	+				-0.0
3,804,071	-				+1.0
3,804,126	+				-0.0
3,804,126	+				+1.0
3,804,126	+				+1.0
3,804,126	+				+1.0
3,804,126	+				-0.0
3,804,127	-				-0.2
3,804,212	+				-0.0
3,804,212	+				+1.0
3,804,213	-				+1.0
3,804,290	+		Pf6N2E2_3297	0.13	-1.1
3,804,290	+		Pf6N2E2_3297	0.13	-0.0
3,804,473	+		Pf6N2E2_3297	0.26	-1.0
3,804,473	+		Pf6N2E2_3297	0.26	-0.6
3,804,474	-		Pf6N2E2_3297	0.26	+1.0
3,804,474	-		Pf6N2E2_3297	0.26	-0.2
3,804,474	-		Pf6N2E2_3297	0.26	-0.0
3,804,567	-		Pf6N2E2_3297	0.33	-0.6
3,804,567	-		Pf6N2E2_3297	0.33	-0.4
3,804,674	+		Pf6N2E2_3297	0.41	-0.0
3,804,674	+		Pf6N2E2_3297	0.41	-0.7
3,804,675	-		Pf6N2E2_3297	0.41	-1.5
3,804,701	+		Pf6N2E2_3297	0.43	-0.5
3,804,701	+		Pf6N2E2_3297	0.43	+1.0
3,804,702	-		Pf6N2E2_3297	0.43	+1.0
3,804,702	-		Pf6N2E2_3297	0.43	-0.0
3,804,723	-		Pf6N2E2_3297	0.44	-0.0
3,804,734	+		Pf6N2E2_3297	0.45	-0.4
3,804,734	+		Pf6N2E2_3297	0.45	-0.4
3,804,735	-		Pf6N2E2_3297	0.45	-1.0
3,804,776	+		Pf6N2E2_3297	0.48	-1.4
3,804,776	+		Pf6N2E2_3297	0.48	-0.6
3,804,777	-		Pf6N2E2_3297	0.48	-0.6
3,804,777	-		Pf6N2E2_3297	0.48	+1.0
3,804,902	+		Pf6N2E2_3297	0.57	+1.0
3,804,902	+		Pf6N2E2_3297	0.57	-0.6
3,804,902	+		Pf6N2E2_3297	0.57	-0.0
3,804,903	-		Pf6N2E2_3297	0.58	-0.0
3,804,903	-		Pf6N2E2_3297	0.58	+1.0
3,804,903	-		Pf6N2E2_3297	0.58	-0.6
3,805,029	-		Pf6N2E2_3297	0.67	-0.7
3,805,029	-		Pf6N2E2_3297	0.67	-1.2
3,805,196	+		Pf6N2E2_3297	0.79	-1.0
3,805,196	+		Pf6N2E2_3297	0.79	+1.0
3,805,196	+		Pf6N2E2_3297	0.79	+1.0
3,805,197	-		Pf6N2E2_3297	0.79	-0.0
3,805,197	-		Pf6N2E2_3297	0.79	+1.0
3,805,197	-		Pf6N2E2_3297	0.79	+1.0
3,805,244	+		Pf6N2E2_3297	0.82	-0.0
3,805,305	-		Pf6N2E2_3297	0.87	+1.0
3,805,329	+		Pf6N2E2_3297	0.89	-0.6
3,805,329	+		Pf6N2E2_3297	0.89	-0.0
3,805,329	+		Pf6N2E2_3297	0.89	-0.0
3,805,329	+		Pf6N2E2_3297	0.89	-0.6
3,805,329	+		Pf6N2E2_3297	0.89	+1.0
3,805,329	+		Pf6N2E2_3297	0.89	-0.4
3,805,330	-		Pf6N2E2_3297	0.89	+1.0
3,805,330	-		Pf6N2E2_3297	0.89	-0.0
3,805,330	-		Pf6N2E2_3297	0.89	-0.6
3,805,330	-		Pf6N2E2_3297	0.89	-0.0
3,805,330	-		Pf6N2E2_3297	0.89	-0.0
3,805,330	-		Pf6N2E2_3297	0.89	-0.5
3,805,331	+		Pf6N2E2_3297	0.89	-0.6
3,805,331	+		Pf6N2E2_3297	0.89	-0.6
3,805,331	+		Pf6N2E2_3297	0.89	-0.7
3,805,331	+		Pf6N2E2_3297	0.89	-0.6
3,805,331	+		Pf6N2E2_3297	0.89	+1.0
3,805,332	-		Pf6N2E2_3297	0.89	-0.0
3,805,409	+				+1.6
3,805,409	+				-0.6
3,805,409	+				+1.0
3,805,409	+				-1.0
3,805,409	+				+1.0
3,805,409	+				+1.0
3,805,484	+				-0.0
3,805,484	+				-0.7
3,805,484	+				-0.6
3,805,484	+				+1.0
3,805,484	+				+1.0
3,805,484	+				+1.0
3,805,484	+				-1.8
3,805,484	+				+0.0
3,805,485	-				+0.6
3,805,490	+				+1.0
3,805,490	+				-2.9
3,805,490	+				+1.0
3,805,491	-				+1.0
3,805,491	-				+0.4
3,805,499	+				+1.0
3,805,500	-				-0.0
3,805,504	-				-0.0
3,805,504	-				+1.0
3,805,510	-				+1.0
3,805,569	+				+1.0
3,805,569	+				-0.0
3,805,570	-				-0.1
3,805,570	-				-0.3
3,805,570	-				+1.0
3,805,570	-				-0.6
3,805,570	-				-0.8
3,805,570	-				-0.6
3,805,581	+				-0.8
3,805,581	+				+1.0
3,805,582	-				-0.0
3,805,582	-				+1.0
3,805,582	-				+1.0
3,805,591	+				-0.6
3,805,602	+				-0.6
3,805,602	+				-1.6
3,805,603	-				+1.0
3,805,603	-				-0.5
3,805,603	-				-0.7
3,805,641	+				+1.0
3,805,641	+				+1.0
3,805,642	-				-0.8
3,805,678	-				+1.0
3,805,678	-				+1.0
3,805,750	-		Pf6N2E2_3298	0.13	+1.0
3,805,765	+		Pf6N2E2_3298	0.14	-0.0
3,805,824	+		Pf6N2E2_3298	0.18	+0.4
3,805,825	-		Pf6N2E2_3298	0.18	+1.0
3,805,927	-		Pf6N2E2_3298	0.25	-1.2
3,805,927	-		Pf6N2E2_3298	0.25	+0.4
3,806,001	+		Pf6N2E2_3298	0.30	-0.0
3,806,001	+		Pf6N2E2_3298	0.30	-0.0
3,806,001	+		Pf6N2E2_3298	0.30	-0.6
3,806,002	-		Pf6N2E2_3298	0.30	-0.7