Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3015

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,501,456	+		Pf6N2E2_3013	0.34	-0.6
3,501,456	+		Pf6N2E2_3013	0.34	-0.0
3,501,539	+		Pf6N2E2_3013	0.42	-0.3
3,501,539	+		Pf6N2E2_3013	0.42	-1.0
3,501,540	-		Pf6N2E2_3013	0.42	+1.0
3,501,597	+		Pf6N2E2_3013	0.48	-0.0
3,501,597	+		Pf6N2E2_3013	0.48	-0.4
3,501,597	+		Pf6N2E2_3013	0.48	-0.6
3,501,597	+		Pf6N2E2_3013	0.48	-0.2
3,501,597	+		Pf6N2E2_3013	0.48	+1.0
3,501,598	-		Pf6N2E2_3013	0.48	-0.0
3,501,598	-		Pf6N2E2_3013	0.48	-0.7
3,501,598	-		Pf6N2E2_3013	0.48	-0.0
3,501,598	-		Pf6N2E2_3013	0.48	-0.6
3,501,598	-		Pf6N2E2_3013	0.48	-0.0
3,501,598	-		Pf6N2E2_3013	0.48	-0.0
3,501,630	+		Pf6N2E2_3013	0.51	-0.8
3,501,631	-		Pf6N2E2_3013	0.51	+0.4
3,501,631	-		Pf6N2E2_3013	0.51	+1.0
3,502,217	+		Pf6N2E2_3014	0.38	-0.0
3,502,217	+		Pf6N2E2_3014	0.38	+1.0
3,502,299	+		Pf6N2E2_3014	0.77	-1.7
3,502,543	+		Pf6N2E2_3015	0.53	-1.4
3,502,544	-		Pf6N2E2_3015	0.53	+1.0
3,502,544	-		Pf6N2E2_3015	0.53	-0.0
3,502,544	-		Pf6N2E2_3015	0.53	-1.7
3,502,729	+				-0.4
3,502,729	+				-0.0
3,502,730	-				-0.5
3,502,730	-				-0.7
3,502,866	+				+1.0
3,502,866	+				-0.7
3,502,867	-				+1.0
3,503,168	+		Pf6N2E2_3016	0.20	-0.4
3,503,207	+		Pf6N2E2_3016	0.22	-0.0
3,503,297	-		Pf6N2E2_3016	0.26	+1.0
3,503,297	-		Pf6N2E2_3016	0.26	-0.6
3,503,297	-		Pf6N2E2_3016	0.26	-1.4
3,503,306	+		Pf6N2E2_3016	0.27	+0.4
3,503,477	+		Pf6N2E2_3016	0.35	-0.6
3,503,548	+		Pf6N2E2_3016	0.38	+1.0