Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2635

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,096,653	+		Pf6N2E2_2634	0.39	+1.0
3,096,653	+		Pf6N2E2_2634	0.39	+1.0
3,096,653	+		Pf6N2E2_2634	0.39	-0.6
3,096,653	+		Pf6N2E2_2634	0.39	+1.1
3,096,854	+		Pf6N2E2_2634	0.53	-0.4
3,096,854	+		Pf6N2E2_2634	0.53	-0.0
3,096,855	-		Pf6N2E2_2634	0.53	+1.0
3,097,059	-		Pf6N2E2_2634	0.67	-0.6
3,097,097	+		Pf6N2E2_2634	0.69	+1.0
3,097,098	-		Pf6N2E2_2634	0.69	+1.0
3,097,169	+		Pf6N2E2_2634	0.74	+1.7
3,097,169	+		Pf6N2E2_2634	0.74	+1.0
3,097,170	-		Pf6N2E2_2634	0.74	+1.0
3,097,193	-		Pf6N2E2_2634	0.76	-0.0
3,097,232	+		Pf6N2E2_2634	0.79	+0.3
3,097,232	+		Pf6N2E2_2634	0.79	-1.0
3,097,232	+		Pf6N2E2_2634	0.79	-1.2
3,097,232	+		Pf6N2E2_2634	0.79	+1.0
3,097,233	-		Pf6N2E2_2634	0.79	+1.0
3,097,233	-		Pf6N2E2_2634	0.79	-0.6
3,097,276	+		Pf6N2E2_2634	0.82	-0.6
3,097,276	+		Pf6N2E2_2634	0.82	-0.0
3,097,276	+		Pf6N2E2_2634	0.82	-0.7
3,097,277	-		Pf6N2E2_2634	0.82	-0.6
3,097,519	+				-0.9
3,097,519	+				-0.0
3,097,651	+		Pf6N2E2_2635	0.14	+0.7
3,097,651	+		Pf6N2E2_2635	0.14	-0.0
3,097,651	+		Pf6N2E2_2635	0.14	+1.0
3,097,652	-		Pf6N2E2_2635	0.14	-0.0
3,097,690	+		Pf6N2E2_2635	0.18	+0.4
3,097,845	+		Pf6N2E2_2635	0.32	+1.0
3,097,845	+		Pf6N2E2_2635	0.32	+1.0
3,097,846	-		Pf6N2E2_2635	0.33	-0.6
3,097,846	-		Pf6N2E2_2635	0.33	-1.5
3,097,846	-		Pf6N2E2_2635	0.33	-0.3
3,097,894	+		Pf6N2E2_2635	0.37	-0.0
3,097,894	+		Pf6N2E2_2635	0.37	+1.0
3,097,895	-		Pf6N2E2_2635	0.37	+0.1
3,097,990	+		Pf6N2E2_2635	0.46	+0.9
3,097,991	-		Pf6N2E2_2635	0.46	+1.0
3,098,345	+		Pf6N2E2_2635	0.80	+1.0
3,098,345	+		Pf6N2E2_2635	0.80	+1.0
3,098,346	-		Pf6N2E2_2635	0.80	+1.0
3,098,613	+				-0.0
3,098,614	-				+1.0
3,098,630	-				-0.6
3,098,763	+				-0.6
3,098,776	+				+1.0
3,098,776	+				-0.6
3,098,777	-				-0.2
3,098,931	-		Pf6N2E2_2636	0.16	-0.0
3,099,158	+		Pf6N2E2_2636	0.88	-2.2
3,099,158	+		Pf6N2E2_2636	0.88	-0.0
3,099,159	-		Pf6N2E2_2636	0.89	+1.0
3,099,191	+				+1.0
3,099,191	+				-0.6
3,099,192	-				-0.0
3,099,425	+		Pf6N2E2_2637	0.37	-0.3
3,099,425	+		Pf6N2E2_2637	0.37	-0.0
3,099,425	+		Pf6N2E2_2637	0.37	-0.3
3,099,425	+		Pf6N2E2_2637	0.37	+1.0
3,099,426	-		Pf6N2E2_2637	0.37	-0.4
3,099,426	-		Pf6N2E2_2637	0.37	+1.0
3,099,426	-		Pf6N2E2_2637	0.37	+1.0
3,099,473	+		Pf6N2E2_2637	0.45	-0.0
3,099,473	+		Pf6N2E2_2637	0.45	+1.0
3,099,473	+		Pf6N2E2_2637	0.45	+1.0
3,099,473	+		Pf6N2E2_2637	0.45	+1.0
3,099,474	-		Pf6N2E2_2637	0.46	-0.0
3,099,474	-		Pf6N2E2_2637	0.46	+1.0
3,099,474	-		Pf6N2E2_2637	0.46	+1.0
3,099,474	-		Pf6N2E2_2637	0.46	-0.6