Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2622

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,081,178	+		Pf6N2E2_2621	0.78	+1.0
3,081,179	-		Pf6N2E2_2621	0.78	+0.6
3,081,247	+		Pf6N2E2_2621	0.80	-0.0
3,081,247	+		Pf6N2E2_2621	0.80	+1.0
3,081,247	+		Pf6N2E2_2621	0.80	+1.0
3,081,248	-		Pf6N2E2_2621	0.80	+1.0
3,081,248	-		Pf6N2E2_2621	0.80	-0.6
3,081,248	-		Pf6N2E2_2621	0.80	-0.0
3,081,248	-		Pf6N2E2_2621	0.80	-0.0
3,081,248	-		Pf6N2E2_2621	0.80	-0.0
3,081,622	+				-0.9
3,081,854	+				+1.0
3,081,854	+				-0.3
3,081,854	+				-1.0
3,081,855	-				+1.0
3,081,855	-				-0.0
3,081,954	-				+0.1
3,082,190	+		Pf6N2E2_2622	0.13	-2.1
3,082,297	+		Pf6N2E2_2622	0.20	-2.8
3,082,418	+		Pf6N2E2_2622	0.27	-2.5
3,082,419	-		Pf6N2E2_2622	0.27	-2.4
3,082,437	-		Pf6N2E2_2622	0.29	-0.0
3,082,437	-		Pf6N2E2_2622	0.29	-2.1
3,082,453	+		Pf6N2E2_2622	0.30	-1.7
3,082,454	-		Pf6N2E2_2622	0.30	-0.2
3,082,669	+		Pf6N2E2_2622	0.43	-0.6
3,082,669	+		Pf6N2E2_2622	0.43	+1.0
3,082,670	-		Pf6N2E2_2622	0.43	-2.7
3,082,831	+		Pf6N2E2_2622	0.54	+1.0
3,082,870	-		Pf6N2E2_2622	0.56	-0.0
3,082,898	-		Pf6N2E2_2622	0.58	+1.0
3,082,898	-		Pf6N2E2_2622	0.58	-3.0
3,082,899	+		Pf6N2E2_2622	0.58	+1.0
3,082,899	+		Pf6N2E2_2622	0.58	-0.8
3,082,899	+		Pf6N2E2_2622	0.58	+1.0
3,082,900	-		Pf6N2E2_2622	0.58	+1.0
3,082,900	-		Pf6N2E2_2622	0.58	+1.0
3,082,900	-		Pf6N2E2_2622	0.58	-1.1
3,082,900	-		Pf6N2E2_2622	0.58	+1.0
3,083,088	+		Pf6N2E2_2622	0.70	+1.0
3,083,089	-		Pf6N2E2_2622	0.70	+1.0
3,083,089	-		Pf6N2E2_2622	0.70	+1.0
3,083,089	-		Pf6N2E2_2622	0.70	-0.3
3,083,089	-		Pf6N2E2_2622	0.70	-0.6
3,083,089	-		Pf6N2E2_2622	0.70	-1.3
3,083,094	+		Pf6N2E2_2622	0.71	+1.0
3,083,094	+		Pf6N2E2_2622	0.71	-3.5
3,083,094	+		Pf6N2E2_2622	0.71	+1.0
3,083,094	+		Pf6N2E2_2622	0.71	+1.0
3,083,095	-		Pf6N2E2_2622	0.71	+1.0
3,083,095	-		Pf6N2E2_2622	0.71	-1.3
3,083,095	-		Pf6N2E2_2622	0.71	+1.0
3,083,154	+		Pf6N2E2_2622	0.74	+1.0
3,083,154	+		Pf6N2E2_2622	0.74	+1.0
3,083,154	+		Pf6N2E2_2622	0.74	+1.0
3,083,154	+		Pf6N2E2_2622	0.74	-0.6
3,083,155	-		Pf6N2E2_2622	0.74	-2.8
3,083,155	-		Pf6N2E2_2622	0.74	-1.9
3,083,155	-		Pf6N2E2_2622	0.74	+0.4
3,083,155	-		Pf6N2E2_2622	0.74	-2.0
3,083,155	-		Pf6N2E2_2622	0.74	-0.0
3,083,155	-		Pf6N2E2_2622	0.74	-0.0
3,083,333	-		Pf6N2E2_2622	0.86	-0.4
3,083,508	+				+1.0
3,083,509	-				-0.6
3,083,542	+				-0.0
3,083,543	-				-0.0
3,083,543	-				+1.0
3,083,635	+				+1.0
3,083,635	+				-2.0
3,083,635	+				+1.0
3,083,636	-				-0.0
3,083,636	-				-0.0
3,083,638	+				+1.0
3,083,639	-				-1.0
3,083,797	+		Pf6N2E2_2623	0.11	-2.5
3,083,816	+		Pf6N2E2_2623	0.12	-0.0
3,083,816	+		Pf6N2E2_2623	0.12	+1.0
3,083,918	+		Pf6N2E2_2623	0.17	-1.4
3,083,918	+		Pf6N2E2_2623	0.17	+1.0
3,083,919	-		Pf6N2E2_2623	0.17	+0.7
3,083,919	-		Pf6N2E2_2623	0.17	+1.0
3,083,961	-		Pf6N2E2_2623	0.19	-0.0
3,084,078	-		Pf6N2E2_2623	0.25	+1.0
3,084,220	+		Pf6N2E2_2623	0.32	+1.0
3,084,220	+		Pf6N2E2_2623	0.32	-1.0
3,084,220	+		Pf6N2E2_2623	0.32	+1.0
3,084,220	+		Pf6N2E2_2623	0.32	-0.6
3,084,220	+		Pf6N2E2_2623	0.32	+1.0
3,084,220	+		Pf6N2E2_2623	0.32	-0.6
3,084,220	+		Pf6N2E2_2623	0.32	-1.0
3,084,220	+		Pf6N2E2_2623	0.32	+1.0
3,084,220	+		Pf6N2E2_2623	0.32	-1.3
3,084,220	+		Pf6N2E2_2623	0.32	-0.6
3,084,220	+		Pf6N2E2_2623	0.32	+1.0
3,084,220	+				+1.0
3,084,220	+		Pf6N2E2_2623	0.32	-1.7
3,084,221	-		Pf6N2E2_2623	0.32	-1.0
3,084,221	-		Pf6N2E2_2623	0.32	-0.6
3,084,221	-		Pf6N2E2_2623	0.32	-1.1
3,084,221	-		Pf6N2E2_2623	0.32	-0.2
3,084,221	-		Pf6N2E2_2623	0.32	+1.0
3,084,221	-		Pf6N2E2_2623	0.32	-0.6
3,084,221	-		Pf6N2E2_2623	0.32	-0.0
3,084,221	-		Pf6N2E2_2623	0.32	-0.0
3,084,221	-		Pf6N2E2_2623	0.32	-2.1
3,084,221	-		Pf6N2E2_2623	0.32	-1.5
3,084,221	-		Pf6N2E2_2623	0.32	+1.0
3,084,221	-		Pf6N2E2_2623	0.32	+1.0
3,084,221	-		Pf6N2E2_2623	0.32	+1.0
3,084,221	-		Pf6N2E2_2623	0.32	+1.0
3,084,221	-		Pf6N2E2_2623	0.32	-1.7
3,084,510	+		Pf6N2E2_2623	0.46	-0.0
3,084,510	+		Pf6N2E2_2623	0.46	+0.6
3,084,511	-		Pf6N2E2_2623	0.46	-1.5
3,084,511	-		Pf6N2E2_2623	0.46	+1.0
3,084,517	+		Pf6N2E2_2623	0.46	-1.1
3,084,517	+		Pf6N2E2_2623	0.46	-1.6
3,084,518	-		Pf6N2E2_2623	0.46	-1.5
3,084,518	-		Pf6N2E2_2623	0.46	+1.0
3,084,518	-		Pf6N2E2_2623	0.46	-0.0
3,084,547	+		Pf6N2E2_2623	0.47	-0.8