Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_246 and Pf6N2E2_247 are separated by 293 nucleotides Pf6N2E2_247 and Pf6N2E2_248 are separated by 117 nucleotides Pf6N2E2_248 and Pf6N2E2_249 are separated by 384 nucleotides
Pf6N2E2_246 - Methyl-accepting chemotaxis protein, at 306,379 to 308,322
_246
Pf6N2E2_247 - Transcriptional regulator, AraC family, at 308,616 to 309,659
_247
Pf6N2E2_248 - hypothetical protein, at 309,777 to 310,190
_248
Pf6N2E2_249 - Pirin, at 310,575 to 311,297
_249
Position (kb) 308
309
310 Strain fitness (log2 ratio) -1
0
1
2 at 307.801 kb on + strand, within Pf6N2E2_246 at 307.801 kb on + strand, within Pf6N2E2_246 at 307.802 kb on - strand, within Pf6N2E2_246 at 307.819 kb on + strand, within Pf6N2E2_246 at 307.819 kb on + strand, within Pf6N2E2_246 at 307.839 kb on - strand, within Pf6N2E2_246 at 307.839 kb on - strand, within Pf6N2E2_246 at 307.839 kb on - strand, within Pf6N2E2_246 at 307.839 kb on - strand, within Pf6N2E2_246 at 307.841 kb on + strand, within Pf6N2E2_246 at 307.841 kb on + strand, within Pf6N2E2_246 at 307.842 kb on - strand, within Pf6N2E2_246 at 307.855 kb on + strand, within Pf6N2E2_246 at 307.889 kb on + strand, within Pf6N2E2_246 at 307.900 kb on + strand, within Pf6N2E2_246 at 307.900 kb on + strand, within Pf6N2E2_246 at 307.901 kb on - strand, within Pf6N2E2_246 at 307.913 kb on + strand, within Pf6N2E2_246 at 307.914 kb on - strand, within Pf6N2E2_246 at 307.979 kb on + strand, within Pf6N2E2_246 at 308.020 kb on - strand, within Pf6N2E2_246 at 308.317 kb on - strand at 308.344 kb on + strand at 308.345 kb on - strand at 308.414 kb on + strand at 308.415 kb on - strand at 308.415 kb on - strand at 308.426 kb on - strand at 308.426 kb on - strand at 308.514 kb on + strand at 308.514 kb on + strand at 308.514 kb on + strand at 308.527 kb on - strand at 308.601 kb on + strand at 308.601 kb on + strand at 308.601 kb on + strand at 308.601 kb on + strand at 308.601 kb on + strand at 308.602 kb on - strand at 308.605 kb on - strand at 308.615 kb on + strand at 308.616 kb on - strand at 308.616 kb on - strand at 308.638 kb on + strand at 308.662 kb on - strand at 308.716 kb on + strand at 308.717 kb on - strand at 308.717 kb on - strand at 308.717 kb on - strand at 308.717 kb on - strand at 308.726 kb on + strand, within Pf6N2E2_247 at 308.802 kb on + strand, within Pf6N2E2_247 at 308.802 kb on + strand, within Pf6N2E2_247 at 308.803 kb on - strand, within Pf6N2E2_247 at 309.135 kb on + strand, within Pf6N2E2_247 at 309.135 kb on + strand, within Pf6N2E2_247 at 309.136 kb on - strand, within Pf6N2E2_247 at 309.136 kb on - strand, within Pf6N2E2_247 at 309.367 kb on + strand, within Pf6N2E2_247 at 309.367 kb on + strand, within Pf6N2E2_247 at 309.471 kb on + strand, within Pf6N2E2_247 at 309.474 kb on + strand, within Pf6N2E2_247 at 309.618 kb on - strand at 309.622 kb on - strand at 309.726 kb on + strand at 309.726 kb on + strand at 309.772 kb on - strand at 309.772 kb on - strand at 309.772 kb on - strand at 309.772 kb on - strand at 309.772 kb on - strand at 309.785 kb on + strand at 309.958 kb on + strand, within Pf6N2E2_248 at 309.958 kb on + strand, within Pf6N2E2_248 at 309.958 kb on + strand, within Pf6N2E2_248 at 309.958 kb on + strand, within Pf6N2E2_248 at 309.958 kb on + strand, within Pf6N2E2_248 at 309.958 kb on + strand, within Pf6N2E2_248 at 309.959 kb on - strand, within Pf6N2E2_248 at 309.959 kb on - strand, within Pf6N2E2_248 at 309.959 kb on - strand, within Pf6N2E2_248 at 309.959 kb on - strand, within Pf6N2E2_248 at 309.959 kb on - strand, within Pf6N2E2_248 at 309.959 kb on - strand, within Pf6N2E2_248 at 309.959 kb on - strand, within Pf6N2E2_248 at 310.013 kb on - strand, within Pf6N2E2_248 at 310.024 kb on + strand, within Pf6N2E2_248 at 310.025 kb on - strand, within Pf6N2E2_248 at 310.025 kb on - strand, within Pf6N2E2_248 at 310.025 kb on - strand, within Pf6N2E2_248 at 310.041 kb on + strand, within Pf6N2E2_248 at 310.042 kb on - strand, within Pf6N2E2_248 at 310.042 kb on - strand, within Pf6N2E2_248 at 310.090 kb on + strand, within Pf6N2E2_248 at 310.090 kb on + strand, within Pf6N2E2_248 at 310.090 kb on + strand, within Pf6N2E2_248 at 310.111 kb on + strand, within Pf6N2E2_248 at 310.111 kb on + strand, within Pf6N2E2_248 at 310.112 kb on - strand, within Pf6N2E2_248 at 310.112 kb on - strand, within Pf6N2E2_248 at 310.117 kb on + strand, within Pf6N2E2_248 at 310.117 kb on + strand, within Pf6N2E2_248 at 310.117 kb on + strand, within Pf6N2E2_248 at 310.117 kb on + strand, within Pf6N2E2_248 at 310.118 kb on - strand, within Pf6N2E2_248 at 310.158 kb on - strand at 310.176 kb on + strand at 310.177 kb on - strand at 310.177 kb on - strand at 310.177 kb on - strand at 310.179 kb on - strand at 310.206 kb on + strand at 310.207 kb on - strand at 310.227 kb on + strand at 310.328 kb on + strand at 310.393 kb on - strand at 310.449 kb on + strand at 310.450 kb on - strand at 310.450 kb on - strand at 310.469 kb on + strand at 310.469 kb on + strand at 310.469 kb on + strand at 310.509 kb on + strand at 310.510 kb on - strand at 310.517 kb on + strand at 310.517 kb on + strand at 310.518 kb on - strand at 310.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 307,801 + Pf6N2E2_246 0.73 +0.9 307,801 + Pf6N2E2_246 0.73 -0.7 307,802 - Pf6N2E2_246 0.73 +0.9 307,819 + Pf6N2E2_246 0.74 +0.9 307,819 + Pf6N2E2_246 0.74 +0.9 307,839 - Pf6N2E2_246 0.75 +0.9 307,839 - Pf6N2E2_246 0.75 +0.9 307,839 - Pf6N2E2_246 0.75 +0.9 307,839 - Pf6N2E2_246 0.75 +0.9 307,841 + Pf6N2E2_246 0.75 +0.9 307,841 + Pf6N2E2_246 0.75 +0.9 307,842 - Pf6N2E2_246 0.75 +0.9 307,855 + Pf6N2E2_246 0.76 +0.9 307,889 + Pf6N2E2_246 0.78 -0.7 307,900 + Pf6N2E2_246 0.78 +0.9 307,900 + Pf6N2E2_246 0.78 -0.1 307,901 - Pf6N2E2_246 0.78 +0.9 307,913 + Pf6N2E2_246 0.79 +0.9 307,914 - Pf6N2E2_246 0.79 -1.7 307,979 + Pf6N2E2_246 0.82 +1.3 308,020 - Pf6N2E2_246 0.84 +0.9 308,317 - -0.1 308,344 + +0.9 308,345 - +0.9 308,414 + +0.9 308,415 - +0.9 308,415 - +0.9 308,426 - -0.8 308,426 - +0.9 308,514 + +0.9 308,514 + +0.9 308,514 + -0.1 308,527 - +0.9 308,601 + -0.1 308,601 + -0.1 308,601 + +0.9 308,601 + +0.9 308,601 + +0.9 308,602 - -0.1 308,605 - +0.9 308,615 + -1.1 308,616 - -0.7 308,616 - +0.9 308,638 + +0.9 308,662 - +0.9 308,716 + +0.9 308,717 - -0.1 308,717 - -0.1 308,717 - -0.1 308,717 - -0.9 308,726 + Pf6N2E2_247 0.11 +0.9 308,802 + Pf6N2E2_247 0.18 +0.9 308,802 + Pf6N2E2_247 0.18 -0.7 308,803 - Pf6N2E2_247 0.18 -1.7 309,135 + Pf6N2E2_247 0.50 -0.8 309,135 + Pf6N2E2_247 0.50 -0.1 309,136 - Pf6N2E2_247 0.50 +0.9 309,136 - Pf6N2E2_247 0.50 +0.9 309,367 + Pf6N2E2_247 0.72 -0.8 309,367 + Pf6N2E2_247 0.72 -0.9 309,471 + Pf6N2E2_247 0.82 -0.1 309,474 + Pf6N2E2_247 0.82 -0.7 309,618 - +0.9 309,622 - -0.1 309,726 + -0.1 309,726 + +0.9 309,772 - -0.1 309,772 - +0.9 309,772 - +0.9 309,772 - +0.3 309,772 - +0.9 309,785 + +0.9 309,958 + Pf6N2E2_248 0.44 -0.1 309,958 + Pf6N2E2_248 0.44 +0.9 309,958 + Pf6N2E2_248 0.44 +0.9 309,958 + Pf6N2E2_248 0.44 -0.7 309,958 + Pf6N2E2_248 0.44 +0.9 309,958 + Pf6N2E2_248 0.44 +0.9 309,959 - Pf6N2E2_248 0.44 +0.9 309,959 - Pf6N2E2_248 0.44 +0.9 309,959 - Pf6N2E2_248 0.44 +0.9 309,959 - Pf6N2E2_248 0.44 +0.9 309,959 - Pf6N2E2_248 0.44 +0.9 309,959 - Pf6N2E2_248 0.44 -0.1 309,959 - Pf6N2E2_248 0.44 -0.1 310,013 - Pf6N2E2_248 0.57 +0.9 310,024 + Pf6N2E2_248 0.60 -0.1 310,025 - Pf6N2E2_248 0.60 -0.1 310,025 - Pf6N2E2_248 0.60 +0.9 310,025 - Pf6N2E2_248 0.60 +0.9 310,041 + Pf6N2E2_248 0.64 -0.7 310,042 - Pf6N2E2_248 0.64 +0.9 310,042 - Pf6N2E2_248 0.64 -0.8 310,090 + Pf6N2E2_248 0.76 +0.9 310,090 + Pf6N2E2_248 0.76 +0.9 310,090 + Pf6N2E2_248 0.76 +0.9 310,111 + Pf6N2E2_248 0.81 -0.1 310,111 + Pf6N2E2_248 0.81 +0.9 310,112 - Pf6N2E2_248 0.81 +1.9 310,112 - Pf6N2E2_248 0.81 -0.1 310,117 + Pf6N2E2_248 0.82 +0.9 310,117 + Pf6N2E2_248 0.82 +0.9 310,117 + Pf6N2E2_248 0.82 -1.7 310,117 + Pf6N2E2_248 0.82 -1.1 310,118 - Pf6N2E2_248 0.82 +0.9 310,158 - +0.9 310,176 + +0.9 310,177 - -1.4 310,177 - +0.9 310,177 - -0.7 310,179 - +0.9 310,206 + -1.7 310,207 - -0.1 310,227 + +0.9 310,328 + +0.9 310,393 - -0.1 310,449 + +0.9 310,450 - +0.9 310,450 - +0.9 310,469 + +0.9 310,469 + +0.9 310,469 + -0.7 310,509 + +0.9 310,510 - +0.9 310,517 + -0.1 310,517 + +0.9 310,518 - +0.9 310,526 + +0.9
Or see this region's nucleotide sequence