Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1004

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1003 and Pf6N2E2_1004 are separated by 88 nucleotidesPf6N2E2_1004 and Pf6N2E2_1005 are separated by 85 nucleotides Pf6N2E2_1003 - Fucose permease, at 1,172,313 to 1,173,695 _1003 Pf6N2E2_1004 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,173,784 to 1,174,542 _1004 Pf6N2E2_1005 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 1,174,628 to 1,175,581 _1005 Position (kb) 1173 1174 1175Strain fitness (log2 ratio) -2 -1 0 1at 1172.927 kb on - strand, within Pf6N2E2_1003at 1173.009 kb on + strand, within Pf6N2E2_1003at 1173.009 kb on + strand, within Pf6N2E2_1003at 1173.010 kb on - strand, within Pf6N2E2_1003at 1173.010 kb on - strand, within Pf6N2E2_1003at 1173.010 kb on - strand, within Pf6N2E2_1003at 1173.125 kb on - strand, within Pf6N2E2_1003at 1173.125 kb on - strand, within Pf6N2E2_1003at 1173.125 kb on - strand, within Pf6N2E2_1003at 1173.189 kb on + strand, within Pf6N2E2_1003at 1173.189 kb on + strand, within Pf6N2E2_1003at 1173.190 kb on - strand, within Pf6N2E2_1003at 1173.219 kb on + strand, within Pf6N2E2_1003at 1173.264 kb on + strand, within Pf6N2E2_1003at 1173.264 kb on + strand, within Pf6N2E2_1003at 1173.264 kb on + strand, within Pf6N2E2_1003at 1173.291 kb on + strand, within Pf6N2E2_1003at 1173.291 kb on + strand, within Pf6N2E2_1003at 1173.291 kb on + strand, within Pf6N2E2_1003at 1173.292 kb on - strand, within Pf6N2E2_1003at 1173.292 kb on - strand, within Pf6N2E2_1003at 1173.292 kb on - strand, within Pf6N2E2_1003at 1173.314 kb on + strand, within Pf6N2E2_1003at 1173.314 kb on + strand, within Pf6N2E2_1003at 1173.441 kb on + strand, within Pf6N2E2_1003at 1173.441 kb on + strand, within Pf6N2E2_1003at 1173.442 kb on - strand, within Pf6N2E2_1003at 1173.462 kb on + strand, within Pf6N2E2_1003at 1173.462 kb on + strand, within Pf6N2E2_1003at 1173.612 kb on + strandat 1173.612 kb on + strandat 1173.613 kb on - strandat 1173.613 kb on - strandat 1173.616 kb on + strandat 1173.684 kb on - strandat 1173.722 kb on + strandat 1173.722 kb on + strandat 1173.778 kb on + strandat 1173.779 kb on - strandat 1173.816 kb on + strandat 1173.827 kb on + strandat 1173.827 kb on + strandat 1173.827 kb on + strandat 1173.828 kb on - strandat 1173.831 kb on + strandat 1173.831 kb on + strandat 1173.832 kb on - strandat 1173.832 kb on - strandat 1173.832 kb on - strandat 1173.832 kb on - strandat 1173.832 kb on - strandat 1173.946 kb on + strand, within Pf6N2E2_1004at 1173.947 kb on - strand, within Pf6N2E2_1004at 1173.947 kb on - strand, within Pf6N2E2_1004at 1173.947 kb on - strand, within Pf6N2E2_1004at 1173.958 kb on - strand, within Pf6N2E2_1004at 1174.023 kb on - strand, within Pf6N2E2_1004at 1174.049 kb on + strand, within Pf6N2E2_1004at 1174.049 kb on + strand, within Pf6N2E2_1004at 1174.074 kb on - strand, within Pf6N2E2_1004at 1174.081 kb on + strand, within Pf6N2E2_1004at 1174.132 kb on - strand, within Pf6N2E2_1004at 1174.153 kb on + strand, within Pf6N2E2_1004at 1174.313 kb on - strand, within Pf6N2E2_1004at 1174.422 kb on + strand, within Pf6N2E2_1004at 1174.423 kb on - strand, within Pf6N2E2_1004at 1174.423 kb on - strand, within Pf6N2E2_1004at 1174.423 kb on - strand, within Pf6N2E2_1004at 1174.466 kb on + strand, within Pf6N2E2_1004at 1174.466 kb on + strand, within Pf6N2E2_1004at 1174.693 kb on - strandat 1174.759 kb on + strand, within Pf6N2E2_1005at 1174.759 kb on + strand, within Pf6N2E2_1005at 1174.763 kb on + strand, within Pf6N2E2_1005at 1174.763 kb on + strand, within Pf6N2E2_1005at 1174.763 kb on + strand, within Pf6N2E2_1005at 1174.763 kb on + strand, within Pf6N2E2_1005at 1174.764 kb on - strand, within Pf6N2E2_1005at 1174.764 kb on - strand, within Pf6N2E2_1005at 1174.764 kb on - strand, within Pf6N2E2_1005at 1174.806 kb on + strand, within Pf6N2E2_1005at 1174.806 kb on + strand, within Pf6N2E2_1005at 1174.806 kb on + strand, within Pf6N2E2_1005at 1174.807 kb on - strand, within Pf6N2E2_1005at 1174.947 kb on + strand, within Pf6N2E2_1005at 1174.947 kb on + strand, within Pf6N2E2_1005at 1174.947 kb on + strand, within Pf6N2E2_1005at 1174.948 kb on - strand, within Pf6N2E2_1005at 1175.013 kb on - strand, within Pf6N2E2_1005at 1175.048 kb on - strand, within Pf6N2E2_1005at 1175.048 kb on - strand, within Pf6N2E2_1005at 1175.285 kb on - strand, within Pf6N2E2_1005

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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1,172,927 - Pf6N2E2_1003 0.44 -0.1
1,173,009 + Pf6N2E2_1003 0.50 +0.9
1,173,009 + Pf6N2E2_1003 0.50 +0.9
1,173,010 - Pf6N2E2_1003 0.50 -0.1
1,173,010 - Pf6N2E2_1003 0.50 +0.9
1,173,010 - Pf6N2E2_1003 0.50 +0.4
1,173,125 - Pf6N2E2_1003 0.59 +0.9
1,173,125 - Pf6N2E2_1003 0.59 +0.9
1,173,125 - Pf6N2E2_1003 0.59 +0.9
1,173,189 + Pf6N2E2_1003 0.63 -2.2
1,173,189 + Pf6N2E2_1003 0.63 +0.9
1,173,190 - Pf6N2E2_1003 0.63 +0.9
1,173,219 + Pf6N2E2_1003 0.66 -0.1
1,173,264 + Pf6N2E2_1003 0.69 -0.1
1,173,264 + Pf6N2E2_1003 0.69 +0.9
1,173,264 + Pf6N2E2_1003 0.69 +0.9
1,173,291 + Pf6N2E2_1003 0.71 +0.1
1,173,291 + Pf6N2E2_1003 0.71 +0.9
1,173,291 + Pf6N2E2_1003 0.71 +0.9
1,173,292 - Pf6N2E2_1003 0.71 +0.9
1,173,292 - Pf6N2E2_1003 0.71 -1.0
1,173,292 - Pf6N2E2_1003 0.71 +0.3
1,173,314 + Pf6N2E2_1003 0.72 +0.9
1,173,314 + Pf6N2E2_1003 0.72 +0.9
1,173,441 + Pf6N2E2_1003 0.82 -0.1
1,173,441 + Pf6N2E2_1003 0.82 -0.1
1,173,442 - Pf6N2E2_1003 0.82 +0.9
1,173,462 + Pf6N2E2_1003 0.83 -0.1
1,173,462 + Pf6N2E2_1003 0.83 -0.1
1,173,612 + -0.5
1,173,612 + +0.4
1,173,613 - +0.9
1,173,613 - +0.1
1,173,616 + +0.9
1,173,684 - +0.9
1,173,722 + +0.9
1,173,722 + -0.6
1,173,778 + +0.9
1,173,779 - -0.1
1,173,816 + -0.1
1,173,827 + +0.9
1,173,827 + -0.6
1,173,827 + -0.1
1,173,828 - -0.1
1,173,831 + -0.6
1,173,831 + +0.2
1,173,832 - +0.9
1,173,832 - -0.1
1,173,832 - +0.9
1,173,832 - +0.9
1,173,832 - +0.4
1,173,946 + Pf6N2E2_1004 0.21 +0.9
1,173,947 - Pf6N2E2_1004 0.21 -0.7
1,173,947 - Pf6N2E2_1004 0.21 -0.1
1,173,947 - Pf6N2E2_1004 0.21 +0.9
1,173,958 - Pf6N2E2_1004 0.23 -0.8
1,174,023 - Pf6N2E2_1004 0.31 -1.1
1,174,049 + Pf6N2E2_1004 0.35 +0.9
1,174,049 + Pf6N2E2_1004 0.35 -0.1
1,174,074 - Pf6N2E2_1004 0.38 +0.9
1,174,081 + Pf6N2E2_1004 0.39 -0.7
1,174,132 - Pf6N2E2_1004 0.46 +0.9
1,174,153 + Pf6N2E2_1004 0.49 -1.0
1,174,313 - Pf6N2E2_1004 0.70 +0.9
1,174,422 + Pf6N2E2_1004 0.84 -1.4
1,174,423 - Pf6N2E2_1004 0.84 -0.1
1,174,423 - Pf6N2E2_1004 0.84 -0.1
1,174,423 - Pf6N2E2_1004 0.84 +0.9
1,174,466 + Pf6N2E2_1004 0.90 -0.7
1,174,466 + Pf6N2E2_1004 0.90 -0.1
1,174,693 - +0.9
1,174,759 + Pf6N2E2_1005 0.14 +0.9
1,174,759 + Pf6N2E2_1005 0.14 +0.9
1,174,763 + Pf6N2E2_1005 0.14 +0.9
1,174,763 + Pf6N2E2_1005 0.14 -0.1
1,174,763 + Pf6N2E2_1005 0.14 +0.9
1,174,763 + Pf6N2E2_1005 0.14 +0.9
1,174,764 - Pf6N2E2_1005 0.14 -0.1
1,174,764 - Pf6N2E2_1005 0.14 +0.9
1,174,764 - Pf6N2E2_1005 0.14 +0.9
1,174,806 + Pf6N2E2_1005 0.19 +0.9
1,174,806 + Pf6N2E2_1005 0.19 -0.1
1,174,806 + Pf6N2E2_1005 0.19 +0.9
1,174,807 - Pf6N2E2_1005 0.19 +0.9
1,174,947 + Pf6N2E2_1005 0.33 -2.4
1,174,947 + Pf6N2E2_1005 0.33 -0.1
1,174,947 + Pf6N2E2_1005 0.33 +0.9
1,174,948 - Pf6N2E2_1005 0.34 -0.9
1,175,013 - Pf6N2E2_1005 0.40 +0.9
1,175,048 - Pf6N2E2_1005 0.44 -0.4
1,175,048 - Pf6N2E2_1005 0.44 +0.9
1,175,285 - Pf6N2E2_1005 0.69 +0.9

Or see this region's nucleotide sequence