Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_9

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_8 and Pf6N2E2_9 are separated by 204 nucleotidesPf6N2E2_9 and Pf6N2E2_10 are separated by 37 nucleotides Pf6N2E2_8 - TonB-dependent siderophore receptor, at 31,862 to 34,336 _8 Pf6N2E2_9 - Pyoverdine sidechain non-ribosomal peptide synthetase PvdD @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 34,541 to 38,686 _9 Pf6N2E2_10 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 38,724 to 40,382 _10 Position (kb) 34 35 36 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 33.572 kb on - strand, within Pf6N2E2_8at 33.638 kb on + strand, within Pf6N2E2_8at 33.638 kb on + strand, within Pf6N2E2_8at 33.638 kb on + strand, within Pf6N2E2_8at 33.638 kb on + strand, within Pf6N2E2_8at 33.638 kb on + strand, within Pf6N2E2_8at 33.638 kb on + strand, within Pf6N2E2_8at 33.639 kb on - strand, within Pf6N2E2_8at 33.639 kb on - strand, within Pf6N2E2_8at 33.639 kb on - strand, within Pf6N2E2_8at 33.639 kb on - strand, within Pf6N2E2_8at 33.639 kb on - strand, within Pf6N2E2_8at 33.639 kb on - strand, within Pf6N2E2_8at 33.639 kb on - strand, within Pf6N2E2_8at 33.674 kb on + strand, within Pf6N2E2_8at 33.674 kb on + strand, within Pf6N2E2_8at 33.675 kb on - strand, within Pf6N2E2_8at 33.675 kb on - strand, within Pf6N2E2_8at 33.749 kb on + strand, within Pf6N2E2_8at 33.749 kb on + strand, within Pf6N2E2_8at 33.749 kb on + strand, within Pf6N2E2_8at 33.750 kb on - strand, within Pf6N2E2_8at 33.750 kb on - strand, within Pf6N2E2_8at 33.750 kb on - strand, within Pf6N2E2_8at 33.750 kb on - strand, within Pf6N2E2_8at 33.793 kb on + strand, within Pf6N2E2_8at 33.794 kb on - strand, within Pf6N2E2_8at 33.794 kb on - strand, within Pf6N2E2_8at 33.794 kb on - strand, within Pf6N2E2_8at 33.794 kb on - strand, within Pf6N2E2_8at 33.853 kb on + strand, within Pf6N2E2_8at 33.962 kb on + strand, within Pf6N2E2_8at 33.962 kb on + strand, within Pf6N2E2_8at 33.962 kb on + strand, within Pf6N2E2_8at 33.962 kb on + strand, within Pf6N2E2_8at 33.962 kb on + strand, within Pf6N2E2_8at 33.962 kb on + strand, within Pf6N2E2_8at 33.962 kb on + strand, within Pf6N2E2_8at 33.963 kb on - strand, within Pf6N2E2_8at 33.963 kb on - strand, within Pf6N2E2_8at 33.963 kb on - strand, within Pf6N2E2_8at 34.016 kb on - strand, within Pf6N2E2_8at 34.052 kb on - strand, within Pf6N2E2_8at 34.052 kb on - strand, within Pf6N2E2_8at 34.055 kb on + strand, within Pf6N2E2_8at 34.055 kb on + strand, within Pf6N2E2_8at 34.128 kb on - strandat 34.133 kb on + strandat 34.133 kb on + strandat 34.134 kb on - strandat 34.134 kb on - strandat 34.154 kb on + strandat 34.241 kb on + strandat 34.241 kb on + strandat 34.241 kb on + strandat 34.241 kb on + strandat 34.242 kb on - strandat 34.257 kb on - strandat 34.319 kb on + strandat 34.320 kb on - strandat 34.386 kb on - strandat 34.543 kb on - strandat 34.543 kb on - strandat 34.546 kb on + strandat 34.546 kb on + strandat 34.546 kb on + strandat 34.547 kb on - strandat 34.547 kb on - strandat 34.547 kb on - strandat 34.547 kb on - strandat 34.547 kb on - strandat 34.547 kb on - strandat 34.547 kb on - strandat 34.667 kb on - strandat 34.667 kb on - strandat 34.667 kb on - strandat 34.669 kb on - strandat 34.738 kb on + strandat 34.939 kb on - strandat 34.983 kb on + strand, within Pf6N2E2_9at 34.983 kb on + strand, within Pf6N2E2_9at 34.983 kb on + strand, within Pf6N2E2_9at 34.984 kb on - strand, within Pf6N2E2_9at 34.984 kb on - strand, within Pf6N2E2_9at 35.119 kb on + strand, within Pf6N2E2_9at 35.190 kb on + strand, within Pf6N2E2_9at 35.191 kb on - strand, within Pf6N2E2_9at 35.191 kb on - strand, within Pf6N2E2_9at 35.191 kb on - strand, within Pf6N2E2_9at 35.193 kb on + strand, within Pf6N2E2_9at 35.384 kb on + strand, within Pf6N2E2_9at 35.673 kb on - strand, within Pf6N2E2_9at 35.676 kb on + strand, within Pf6N2E2_9at 35.676 kb on + strand, within Pf6N2E2_9at 35.677 kb on - strand, within Pf6N2E2_9at 35.677 kb on - strand, within Pf6N2E2_9at 35.677 kb on - strand, within Pf6N2E2_9at 35.787 kb on + strand, within Pf6N2E2_9at 35.788 kb on - strand, within Pf6N2E2_9at 35.788 kb on - strand, within Pf6N2E2_9at 35.788 kb on - strand, within Pf6N2E2_9at 35.788 kb on - strand, within Pf6N2E2_9at 35.788 kb on - strand, within Pf6N2E2_9at 35.832 kb on - strand, within Pf6N2E2_9at 36.165 kb on + strand, within Pf6N2E2_9at 36.165 kb on + strand, within Pf6N2E2_9at 36.165 kb on + strand, within Pf6N2E2_9at 36.166 kb on - strand, within Pf6N2E2_9at 36.166 kb on - strand, within Pf6N2E2_9at 36.166 kb on - strand, within Pf6N2E2_9at 36.166 kb on - strand, within Pf6N2E2_9at 36.166 kb on - strand, within Pf6N2E2_9at 36.166 kb on - strand, within Pf6N2E2_9at 36.166 kb on - strand, within Pf6N2E2_9at 36.220 kb on - strand, within Pf6N2E2_9at 36.220 kb on - strand, within Pf6N2E2_9at 36.238 kb on + strand, within Pf6N2E2_9at 36.330 kb on + strand, within Pf6N2E2_9at 36.330 kb on + strand, within Pf6N2E2_9at 36.331 kb on - strand, within Pf6N2E2_9at 36.331 kb on - strand, within Pf6N2E2_9at 36.331 kb on - strand, within Pf6N2E2_9at 36.331 kb on - strand, within Pf6N2E2_9at 36.331 kb on - strand, within Pf6N2E2_9at 36.334 kb on + strand, within Pf6N2E2_9at 36.334 kb on + strand, within Pf6N2E2_9at 36.334 kb on + strand, within Pf6N2E2_9at 36.335 kb on - strand, within Pf6N2E2_9at 36.335 kb on - strand, within Pf6N2E2_9at 36.537 kb on + strand, within Pf6N2E2_9at 36.639 kb on + strand, within Pf6N2E2_9at 36.639 kb on + strand, within Pf6N2E2_9at 36.640 kb on - strand, within Pf6N2E2_9at 36.640 kb on - strand, within Pf6N2E2_9at 36.640 kb on - strand, within Pf6N2E2_9at 36.640 kb on - strand, within Pf6N2E2_9at 36.768 kb on + strand, within Pf6N2E2_9at 36.768 kb on + strand, within Pf6N2E2_9at 36.768 kb on + strand, within Pf6N2E2_9at 36.768 kb on + strand, within Pf6N2E2_9at 36.768 kb on + strand, within Pf6N2E2_9at 36.768 kb on + strandat 36.769 kb on - strand, within Pf6N2E2_9at 36.769 kb on - strand, within Pf6N2E2_9at 36.777 kb on + strand, within Pf6N2E2_9at 36.778 kb on - strand, within Pf6N2E2_9at 36.866 kb on + strand, within Pf6N2E2_9at 36.866 kb on + strand, within Pf6N2E2_9at 36.867 kb on - strand, within Pf6N2E2_9at 36.867 kb on - strand, within Pf6N2E2_9at 36.945 kb on + strand, within Pf6N2E2_9at 36.945 kb on + strand, within Pf6N2E2_9at 36.945 kb on + strand, within Pf6N2E2_9at 36.945 kb on + strand, within Pf6N2E2_9at 36.945 kb on + strand, within Pf6N2E2_9at 36.946 kb on - strand, within Pf6N2E2_9at 36.988 kb on - strand, within Pf6N2E2_9at 37.134 kb on + strand, within Pf6N2E2_9at 37.134 kb on + strand, within Pf6N2E2_9at 37.134 kb on + strand, within Pf6N2E2_9at 37.135 kb on - strand, within Pf6N2E2_9at 37.135 kb on - strand, within Pf6N2E2_9at 37.135 kb on - strand, within Pf6N2E2_9at 37.135 kb on - strand, within Pf6N2E2_9at 37.135 kb on - strand, within Pf6N2E2_9at 37.135 kb on - strand, within Pf6N2E2_9at 37.401 kb on + strand, within Pf6N2E2_9at 37.401 kb on + strand, within Pf6N2E2_9at 37.402 kb on - strand, within Pf6N2E2_9at 37.419 kb on - strand, within Pf6N2E2_9at 37.435 kb on - strand, within Pf6N2E2_9at 37.618 kb on - strand, within Pf6N2E2_9at 37.668 kb on + strand, within Pf6N2E2_9at 37.669 kb on - strand, within Pf6N2E2_9at 37.669 kb on - strand, within Pf6N2E2_9at 37.707 kb on + strand, within Pf6N2E2_9at 37.708 kb on - strand, within Pf6N2E2_9at 37.733 kb on + strand, within Pf6N2E2_9at 37.919 kb on + strand, within Pf6N2E2_9at 37.919 kb on + strand, within Pf6N2E2_9at 37.920 kb on - strand, within Pf6N2E2_9at 37.934 kb on - strand, within Pf6N2E2_9at 37.934 kb on - strand, within Pf6N2E2_9at 38.049 kb on + strand, within Pf6N2E2_9at 38.049 kb on + strand, within Pf6N2E2_9at 38.073 kb on + strand, within Pf6N2E2_9at 38.073 kb on + strand, within Pf6N2E2_9at 38.074 kb on - strand, within Pf6N2E2_9at 38.082 kb on + strand, within Pf6N2E2_9at 38.083 kb on - strand, within Pf6N2E2_9at 38.527 kb on - strandat 38.585 kb on + strandat 38.672 kb on + strandat 38.673 kb on - strandat 38.804 kb on - strandat 38.870 kb on + strandat 38.872 kb on + strandat 38.872 kb on + strandat 38.873 kb on - strandat 39.113 kb on - strand, within Pf6N2E2_10at 39.115 kb on + strand, within Pf6N2E2_10at 39.215 kb on - strand, within Pf6N2E2_10at 39.538 kb on + strand, within Pf6N2E2_10at 39.538 kb on + strand, within Pf6N2E2_10at 39.538 kb on + strand, within Pf6N2E2_10

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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33,572 - Pf6N2E2_8 0.69 +1.0
33,638 + Pf6N2E2_8 0.72 -0.6
33,638 + Pf6N2E2_8 0.72 -0.0
33,638 + Pf6N2E2_8 0.72 +1.0
33,638 + Pf6N2E2_8 0.72 +1.0
33,638 + Pf6N2E2_8 0.72 -0.0
33,638 + Pf6N2E2_8 0.72 +1.0
33,639 - Pf6N2E2_8 0.72 -0.5
33,639 - Pf6N2E2_8 0.72 -0.6
33,639 - Pf6N2E2_8 0.72 -0.0
33,639 - Pf6N2E2_8 0.72 -1.8
33,639 - Pf6N2E2_8 0.72 -1.0
33,639 - Pf6N2E2_8 0.72 +1.0
33,639 - Pf6N2E2_8 0.72 +1.0
33,674 + Pf6N2E2_8 0.73 -0.6
33,674 + Pf6N2E2_8 0.73 +1.0
33,675 - Pf6N2E2_8 0.73 +1.0
33,675 - Pf6N2E2_8 0.73 -2.3
33,749 + Pf6N2E2_8 0.76 -2.6
33,749 + Pf6N2E2_8 0.76 +1.0
33,749 + Pf6N2E2_8 0.76 -1.4
33,750 - Pf6N2E2_8 0.76 +1.0
33,750 - Pf6N2E2_8 0.76 +1.0
33,750 - Pf6N2E2_8 0.76 -1.6
33,750 - Pf6N2E2_8 0.76 -0.0
33,793 + Pf6N2E2_8 0.78 -1.4
33,794 - Pf6N2E2_8 0.78 +1.0
33,794 - Pf6N2E2_8 0.78 -1.2
33,794 - Pf6N2E2_8 0.78 +1.0
33,794 - Pf6N2E2_8 0.78 +1.0
33,853 + Pf6N2E2_8 0.80 -1.6
33,962 + Pf6N2E2_8 0.85 +1.0
33,962 + Pf6N2E2_8 0.85 -1.7
33,962 + Pf6N2E2_8 0.85 +1.0
33,962 + Pf6N2E2_8 0.85 -0.0
33,962 + Pf6N2E2_8 0.85 +1.0
33,962 + Pf6N2E2_8 0.85 +1.0
33,962 + Pf6N2E2_8 0.85 -0.6
33,963 - Pf6N2E2_8 0.85 -0.0
33,963 - Pf6N2E2_8 0.85 -1.8
33,963 - Pf6N2E2_8 0.85 +1.0
34,016 - Pf6N2E2_8 0.87 +1.0
34,052 - Pf6N2E2_8 0.88 -1.8
34,052 - Pf6N2E2_8 0.88 -0.0
34,055 + Pf6N2E2_8 0.89 -0.0
34,055 + Pf6N2E2_8 0.89 -0.0
34,128 - +1.0
34,133 + +1.0
34,133 + +1.0
34,134 - -1.0
34,134 - -0.0
34,154 + -0.2
34,241 + -2.1
34,241 + +1.0
34,241 + +1.0
34,241 + +1.0
34,242 - +1.3
34,257 - +1.0
34,319 + -1.7
34,320 - -0.6
34,386 - -0.0
34,543 - -0.0
34,543 - -1.0
34,546 + -1.8
34,546 + +1.0
34,546 + -1.7
34,547 - +1.0
34,547 - -2.3
34,547 - -2.2
34,547 - -0.6
34,547 - +1.0
34,547 - +1.0
34,547 - +1.0
34,667 - +1.0
34,667 - +3.2
34,667 - -2.2
34,669 - +1.0
34,738 + +1.0
34,939 - +1.0
34,983 + Pf6N2E2_9 0.11 -1.6
34,983 + Pf6N2E2_9 0.11 -0.6
34,983 + Pf6N2E2_9 0.11 -0.0
34,984 - Pf6N2E2_9 0.11 -0.0
34,984 - Pf6N2E2_9 0.11 -1.0
35,119 + Pf6N2E2_9 0.14 +1.0
35,190 + Pf6N2E2_9 0.16 +1.0
35,191 - Pf6N2E2_9 0.16 -0.0
35,191 - Pf6N2E2_9 0.16 -1.8
35,191 - Pf6N2E2_9 0.16 -0.0
35,193 + Pf6N2E2_9 0.16 -1.0
35,384 + Pf6N2E2_9 0.20 +1.0
35,673 - Pf6N2E2_9 0.27 -0.0
35,676 + Pf6N2E2_9 0.27 -0.6
35,676 + Pf6N2E2_9 0.27 -1.1
35,677 - Pf6N2E2_9 0.27 +1.0
35,677 - Pf6N2E2_9 0.27 +1.0
35,677 - Pf6N2E2_9 0.27 +1.0
35,787 + Pf6N2E2_9 0.30 -1.7
35,788 - Pf6N2E2_9 0.30 +1.0
35,788 - Pf6N2E2_9 0.30 -1.9
35,788 - Pf6N2E2_9 0.30 +1.0
35,788 - Pf6N2E2_9 0.30 +1.0
35,788 - Pf6N2E2_9 0.30 +1.0
35,832 - Pf6N2E2_9 0.31 +1.0
36,165 + Pf6N2E2_9 0.39 +1.0
36,165 + Pf6N2E2_9 0.39 -2.3
36,165 + Pf6N2E2_9 0.39 -0.6
36,166 - Pf6N2E2_9 0.39 -1.8
36,166 - Pf6N2E2_9 0.39 -0.6
36,166 - Pf6N2E2_9 0.39 +1.0
36,166 - Pf6N2E2_9 0.39 +1.0
36,166 - Pf6N2E2_9 0.39 -0.0
36,166 - Pf6N2E2_9 0.39 -0.0
36,166 - Pf6N2E2_9 0.39 +1.0
36,220 - Pf6N2E2_9 0.40 +1.0
36,220 - Pf6N2E2_9 0.40 -1.7
36,238 + Pf6N2E2_9 0.41 +1.0
36,330 + Pf6N2E2_9 0.43 +1.0
36,330 + Pf6N2E2_9 0.43 -0.0
36,331 - Pf6N2E2_9 0.43 -1.8
36,331 - Pf6N2E2_9 0.43 +1.0
36,331 - Pf6N2E2_9 0.43 -2.1
36,331 - Pf6N2E2_9 0.43 -0.0
36,331 - Pf6N2E2_9 0.43 -1.0
36,334 + Pf6N2E2_9 0.43 +1.0
36,334 + Pf6N2E2_9 0.43 -0.0
36,334 + Pf6N2E2_9 0.43 -1.5
36,335 - Pf6N2E2_9 0.43 +1.0
36,335 - Pf6N2E2_9 0.43 -2.1
36,537 + Pf6N2E2_9 0.48 -2.1
36,639 + Pf6N2E2_9 0.51 -1.4
36,639 + Pf6N2E2_9 0.51 -2.2
36,640 - Pf6N2E2_9 0.51 +1.0
36,640 - Pf6N2E2_9 0.51 -0.0
36,640 - Pf6N2E2_9 0.51 -2.0
36,640 - Pf6N2E2_9 0.51 -0.0
36,768 + Pf6N2E2_9 0.54 +1.0
36,768 + Pf6N2E2_9 0.54 -0.0
36,768 + Pf6N2E2_9 0.54 -0.6
36,768 + Pf6N2E2_9 0.54 -1.3
36,768 + Pf6N2E2_9 0.54 +1.0
36,768 + +1.0
36,769 - Pf6N2E2_9 0.54 +1.0
36,769 - Pf6N2E2_9 0.54 +1.0
36,777 + Pf6N2E2_9 0.54 -1.5
36,778 - Pf6N2E2_9 0.54 -1.0
36,866 + Pf6N2E2_9 0.56 -2.2
36,866 + Pf6N2E2_9 0.56 -0.0
36,867 - Pf6N2E2_9 0.56 -2.4
36,867 - Pf6N2E2_9 0.56 -0.6
36,945 + Pf6N2E2_9 0.58 -1.3
36,945 + Pf6N2E2_9 0.58 -0.0
36,945 + Pf6N2E2_9 0.58 -0.0
36,945 + Pf6N2E2_9 0.58 +1.0
36,945 + Pf6N2E2_9 0.58 +1.0
36,946 - Pf6N2E2_9 0.58 +1.0
36,988 - Pf6N2E2_9 0.59 -0.0
37,134 + Pf6N2E2_9 0.63 -0.6
37,134 + Pf6N2E2_9 0.63 -0.0
37,134 + Pf6N2E2_9 0.63 -0.0
37,135 - Pf6N2E2_9 0.63 +1.0
37,135 - Pf6N2E2_9 0.63 +1.0
37,135 - Pf6N2E2_9 0.63 -1.6
37,135 - Pf6N2E2_9 0.63 -1.9
37,135 - Pf6N2E2_9 0.63 -1.0
37,135 - Pf6N2E2_9 0.63 +1.0
37,401 + Pf6N2E2_9 0.69 +1.0
37,401 + Pf6N2E2_9 0.69 +1.0
37,402 - Pf6N2E2_9 0.69 -0.0
37,419 - Pf6N2E2_9 0.69 -0.0
37,435 - Pf6N2E2_9 0.70 -0.6
37,618 - Pf6N2E2_9 0.74 +1.0
37,668 + Pf6N2E2_9 0.75 -0.0
37,669 - Pf6N2E2_9 0.75 -1.0
37,669 - Pf6N2E2_9 0.75 -0.0
37,707 + Pf6N2E2_9 0.76 -0.0
37,708 - Pf6N2E2_9 0.76 +1.0
37,733 + Pf6N2E2_9 0.77 -1.5
37,919 + Pf6N2E2_9 0.81 +1.0
37,919 + Pf6N2E2_9 0.81 -2.2
37,920 - Pf6N2E2_9 0.82 +1.0
37,934 - Pf6N2E2_9 0.82 -2.7
37,934 - Pf6N2E2_9 0.82 -0.0
38,049 + Pf6N2E2_9 0.85 -3.3
38,049 + Pf6N2E2_9 0.85 -0.0
38,073 + Pf6N2E2_9 0.85 -1.9
38,073 + Pf6N2E2_9 0.85 -1.7
38,074 - Pf6N2E2_9 0.85 -0.0
38,082 + Pf6N2E2_9 0.85 +1.0
38,083 - Pf6N2E2_9 0.85 -0.3
38,527 - -0.0
38,585 + -1.2
38,672 + +1.0
38,673 - -2.0
38,804 - +1.0
38,870 + -0.0
38,872 + +1.0
38,872 + -0.0
38,873 - +1.0
39,113 - Pf6N2E2_10 0.23 +1.0
39,115 + Pf6N2E2_10 0.24 -0.0
39,215 - Pf6N2E2_10 0.30 +1.0
39,538 + Pf6N2E2_10 0.49 +1.0
39,538 + Pf6N2E2_10 0.49 -0.6
39,538 + Pf6N2E2_10 0.49 +1.0

Or see this region's nucleotide sequence