Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_85 and Pf6N2E2_86 are separated by 2 nucleotides Pf6N2E2_86 and Pf6N2E2_87 are separated by 570 nucleotides Pf6N2E2_87 and Pf6N2E2_88 are separated by 175 nucleotides
Pf6N2E2_85 - FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin), at 129,986 to 130,294
_85
Pf6N2E2_86 - FIG022160: hypothetical toxin, at 130,297 to 130,467
_86
Pf6N2E2_87 - hypothetical protein, at 131,038 to 131,397
_87
Pf6N2E2_88 - hypothetical protein, at 131,573 to 131,746
_88
Position (kb) 131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 130.061 kb on + strand, within Pf6N2E2_85 at 130.062 kb on - strand, within Pf6N2E2_85 at 130.104 kb on + strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.105 kb on - strand, within Pf6N2E2_85 at 130.171 kb on - strand, within Pf6N2E2_85 at 130.227 kb on + strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.228 kb on - strand, within Pf6N2E2_85 at 130.256 kb on + strand, within Pf6N2E2_85 at 130.403 kb on + strand, within Pf6N2E2_86 at 130.403 kb on + strand, within Pf6N2E2_86 at 130.404 kb on - strand, within Pf6N2E2_86 at 130.423 kb on + strand, within Pf6N2E2_86 at 130.423 kb on + strand, within Pf6N2E2_86 at 130.424 kb on - strand, within Pf6N2E2_86 at 130.424 kb on - strand, within Pf6N2E2_86 at 130.446 kb on + strand, within Pf6N2E2_86 at 130.446 kb on + strand, within Pf6N2E2_86 at 130.447 kb on - strand, within Pf6N2E2_86 at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.588 kb on - strand at 130.613 kb on - strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.744 kb on - strand at 130.754 kb on + strand at 130.754 kb on + strand at 130.754 kb on + strand at 130.755 kb on - strand at 130.755 kb on - strand at 130.755 kb on - strand at 130.764 kb on - strand at 130.812 kb on + strand at 130.812 kb on + strand at 130.812 kb on + strand at 130.812 kb on + strand at 130.813 kb on - strand at 130.875 kb on + strand at 130.892 kb on + strand at 130.892 kb on + strand at 131.004 kb on + strand at 131.097 kb on + strand, within Pf6N2E2_87 at 131.242 kb on + strand, within Pf6N2E2_87 at 131.243 kb on - strand, within Pf6N2E2_87 at 131.284 kb on + strand, within Pf6N2E2_87 at 131.284 kb on + strand, within Pf6N2E2_87 at 131.284 kb on + strand, within Pf6N2E2_87 at 131.285 kb on - strand, within Pf6N2E2_87 at 131.285 kb on - strand, within Pf6N2E2_87 at 131.285 kb on - strand, within Pf6N2E2_87 at 131.285 kb on - strand, within Pf6N2E2_87 at 131.395 kb on + strand at 131.618 kb on + strand, within Pf6N2E2_88 at 131.687 kb on + strand, within Pf6N2E2_88 at 131.739 kb on - strand at 131.739 kb on - strand at 131.742 kb on + strand at 131.742 kb on + strand at 131.742 kb on + strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.804 kb on + strand at 131.805 kb on - strand at 132.092 kb on - strand at 132.161 kb on + strand at 132.239 kb on - strand at 132.239 kb on - strand at 132.261 kb on + strand at 132.262 kb on - strand at 132.284 kb on + strand at 132.284 kb on + strand at 132.338 kb on + strand at 132.392 kb on + strand at 132.393 kb on - strand at 132.393 kb on - strand at 132.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 130,061 + Pf6N2E2_85 0.24 -1.9 130,062 - Pf6N2E2_85 0.25 -1.7 130,104 + Pf6N2E2_85 0.38 -2.5 130,105 - Pf6N2E2_85 0.39 +1.0 130,105 - Pf6N2E2_85 0.39 -0.0 130,105 - Pf6N2E2_85 0.39 +1.0 130,105 - Pf6N2E2_85 0.39 +1.0 130,171 - Pf6N2E2_85 0.60 +1.0 130,227 + Pf6N2E2_85 0.78 +1.0 130,228 - Pf6N2E2_85 0.78 +1.0 130,228 - Pf6N2E2_85 0.78 -0.0 130,228 - Pf6N2E2_85 0.78 +1.0 130,228 - Pf6N2E2_85 0.78 +1.0 130,228 - Pf6N2E2_85 0.78 -0.0 130,256 + Pf6N2E2_85 0.87 +1.0 130,403 + Pf6N2E2_86 0.62 +1.0 130,403 + Pf6N2E2_86 0.62 -0.0 130,404 - Pf6N2E2_86 0.63 -2.0 130,423 + Pf6N2E2_86 0.74 +1.0 130,423 + Pf6N2E2_86 0.74 +1.0 130,424 - Pf6N2E2_86 0.74 +1.0 130,424 - Pf6N2E2_86 0.74 +1.0 130,446 + Pf6N2E2_86 0.87 +1.0 130,446 + Pf6N2E2_86 0.87 -0.0 130,447 - Pf6N2E2_86 0.88 -0.0 130,587 + -3.5 130,587 + -0.0 130,587 + +1.0 130,588 - +1.0 130,613 - +1.0 130,743 + -1.7 130,743 + -0.0 130,744 - -0.0 130,754 + +1.0 130,754 + -1.3 130,754 + -1.0 130,755 - -2.9 130,755 - -1.3 130,755 - +1.0 130,764 - +1.0 130,812 + -1.0 130,812 + -0.8 130,812 + +1.0 130,812 + +1.0 130,813 - -0.0 130,875 + -0.0 130,892 + +1.0 130,892 + -0.0 131,004 + -0.0 131,097 + Pf6N2E2_87 0.16 -2.8 131,242 + Pf6N2E2_87 0.57 +1.0 131,243 - Pf6N2E2_87 0.57 +1.0 131,284 + Pf6N2E2_87 0.68 -3.2 131,284 + Pf6N2E2_87 0.68 -1.6 131,284 + Pf6N2E2_87 0.68 +1.0 131,285 - Pf6N2E2_87 0.69 +1.0 131,285 - Pf6N2E2_87 0.69 -0.0 131,285 - Pf6N2E2_87 0.69 -0.0 131,285 - Pf6N2E2_87 0.69 -1.2 131,395 + -0.0 131,618 + Pf6N2E2_88 0.26 -2.9 131,687 + Pf6N2E2_88 0.66 -1.5 131,739 - -1.0 131,739 - -2.0 131,742 + -0.0 131,742 + +1.0 131,742 + -2.2 131,743 - -1.0 131,743 - -1.8 131,743 - -0.5 131,743 - +1.0 131,743 - +1.0 131,743 - +1.0 131,804 + +1.0 131,805 - +1.0 132,092 - -1.5 132,161 + +1.0 132,239 - -2.9 132,239 - +1.0 132,261 + -0.8 132,262 - -0.0 132,284 + +1.0 132,284 + -2.5 132,338 + +1.0 132,392 + -0.0 132,393 - -0.6 132,393 - -0.0 132,397 - +1.0
Or see this region's nucleotide sequence