Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_807 and Pf6N2E2_808 are separated by 39 nucleotides Pf6N2E2_808 and Pf6N2E2_809 are separated by 10 nucleotides Pf6N2E2_809 and Pf6N2E2_810 are separated by 160 nucleotides
Pf6N2E2_807 - Various polyols ABC transporter, ATP-binding component, at 939,179 to 940,282
_807
Pf6N2E2_808 - Various polyols ABC transporter, permease component 2, at 940,322 to 941,152
_808
Pf6N2E2_809 - Various polyols ABC transporter, permease component 1, at 941,163 to 942,098
_809
Pf6N2E2_810 - Various polyols ABC transporter, periplasmic substrate-binding protein, at 942,259 to 943,569
_810
Position (kb) 941
942
943 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 940.306 kb on + strand at 940.306 kb on + strand at 940.314 kb on - strand at 940.324 kb on - strand at 940.455 kb on + strand, within Pf6N2E2_808 at 940.455 kb on + strand, within Pf6N2E2_808 at 940.455 kb on + strand, within Pf6N2E2_808 at 940.590 kb on - strand, within Pf6N2E2_808 at 940.590 kb on - strand, within Pf6N2E2_808 at 940.610 kb on + strand, within Pf6N2E2_808 at 940.611 kb on - strand, within Pf6N2E2_808 at 940.668 kb on + strand, within Pf6N2E2_808 at 940.669 kb on - strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.675 kb on - strand, within Pf6N2E2_808 at 940.675 kb on - strand, within Pf6N2E2_808 at 940.713 kb on + strand, within Pf6N2E2_808 at 940.713 kb on + strand, within Pf6N2E2_808 at 940.717 kb on + strand, within Pf6N2E2_808 at 940.717 kb on + strand, within Pf6N2E2_808 at 940.770 kb on + strand, within Pf6N2E2_808 at 940.771 kb on - strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 941.293 kb on + strand, within Pf6N2E2_809 at 941.293 kb on + strand, within Pf6N2E2_809 at 941.294 kb on - strand, within Pf6N2E2_809 at 941.575 kb on - strand, within Pf6N2E2_809 at 941.872 kb on + strand, within Pf6N2E2_809 at 941.873 kb on - strand, within Pf6N2E2_809 at 941.926 kb on + strand, within Pf6N2E2_809 at 941.945 kb on - strand, within Pf6N2E2_809 at 941.945 kb on - strand, within Pf6N2E2_809 at 942.092 kb on + strand at 942.092 kb on + strand at 942.092 kb on + strand at 942.092 kb on + strand at 942.093 kb on - strand at 942.106 kb on + strand at 942.106 kb on + strand at 942.106 kb on + strand at 942.106 kb on + strand at 942.107 kb on - strand at 942.260 kb on + strand at 942.260 kb on + strand at 942.260 kb on + strand at 942.261 kb on - strand at 942.261 kb on - strand at 942.261 kb on - strand at 942.261 kb on - strand at 942.425 kb on + strand, within Pf6N2E2_810 at 942.426 kb on - strand, within Pf6N2E2_810 at 942.512 kb on + strand, within Pf6N2E2_810 at 942.513 kb on - strand, within Pf6N2E2_810 at 942.590 kb on + strand, within Pf6N2E2_810 at 942.616 kb on - strand, within Pf6N2E2_810 at 942.674 kb on + strand, within Pf6N2E2_810 at 942.675 kb on - strand, within Pf6N2E2_810 at 942.675 kb on - strand, within Pf6N2E2_810 at 942.675 kb on - strand, within Pf6N2E2_810 at 942.675 kb on - strand, within Pf6N2E2_810 at 943.037 kb on + strand, within Pf6N2E2_810 at 943.038 kb on - strand, within Pf6N2E2_810 at 943.038 kb on - strand, within Pf6N2E2_810 at 943.038 kb on - strand, within Pf6N2E2_810
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 940,306 + +0.8 940,306 + -0.2 940,314 - -1.5 940,324 - -0.2 940,455 + Pf6N2E2_808 0.16 -2.4 940,455 + Pf6N2E2_808 0.16 -4.6 940,455 + Pf6N2E2_808 0.16 -0.2 940,590 - Pf6N2E2_808 0.32 -2.3 940,590 - Pf6N2E2_808 0.32 -3.5 940,610 + Pf6N2E2_808 0.35 +0.8 940,611 - Pf6N2E2_808 0.35 -2.0 940,668 + Pf6N2E2_808 0.42 -1.6 940,669 - Pf6N2E2_808 0.42 -1.8 940,674 + Pf6N2E2_808 0.42 +0.8 940,674 + Pf6N2E2_808 0.42 -2.5 940,674 + Pf6N2E2_808 0.42 +0.8 940,674 + Pf6N2E2_808 0.42 -0.2 940,674 + Pf6N2E2_808 0.42 +0.8 940,675 - Pf6N2E2_808 0.42 -3.0 940,675 - Pf6N2E2_808 0.42 -0.2 940,713 + Pf6N2E2_808 0.47 -0.8 940,713 + Pf6N2E2_808 0.47 +0.8 940,717 + Pf6N2E2_808 0.48 +0.8 940,717 + Pf6N2E2_808 0.48 +0.8 940,770 + Pf6N2E2_808 0.54 +0.8 940,771 - Pf6N2E2_808 0.54 +0.8 940,831 + Pf6N2E2_808 0.61 -1.2 940,831 + Pf6N2E2_808 0.61 +0.4 940,831 + Pf6N2E2_808 0.61 +0.8 940,831 + Pf6N2E2_808 0.61 +0.8 940,831 + Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 -0.8 940,832 - Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 -0.2 940,832 - Pf6N2E2_808 0.61 -0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,978 - Pf6N2E2_808 0.79 +0.8 940,978 - Pf6N2E2_808 0.79 -2.9 940,978 - Pf6N2E2_808 0.79 -0.8 940,978 - Pf6N2E2_808 0.79 +0.8 940,978 - Pf6N2E2_808 0.79 -1.5 941,293 + Pf6N2E2_809 0.14 +0.8 941,293 + Pf6N2E2_809 0.14 -1.2 941,294 - Pf6N2E2_809 0.14 +0.8 941,575 - Pf6N2E2_809 0.44 -3.6 941,872 + Pf6N2E2_809 0.76 +0.8 941,873 - Pf6N2E2_809 0.76 -0.8 941,926 + Pf6N2E2_809 0.82 -2.7 941,945 - Pf6N2E2_809 0.84 +0.8 941,945 - Pf6N2E2_809 0.84 +0.8 942,092 + +0.8 942,092 + -0.2 942,092 + +0.8 942,092 + -2.2 942,093 - +0.8 942,106 + -1.3 942,106 + +0.8 942,106 + -0.2 942,106 + -1.5 942,107 - -0.2 942,260 + -2.9 942,260 + +0.8 942,260 + +0.8 942,261 - -0.2 942,261 - +0.8 942,261 - -3.0 942,261 - -2.2 942,425 + Pf6N2E2_810 0.13 +0.8 942,426 - Pf6N2E2_810 0.13 -0.2 942,512 + Pf6N2E2_810 0.19 -0.2 942,513 - Pf6N2E2_810 0.19 -1.2 942,590 + Pf6N2E2_810 0.25 +0.8 942,616 - Pf6N2E2_810 0.27 +0.8 942,674 + Pf6N2E2_810 0.32 -2.0 942,675 - Pf6N2E2_810 0.32 -0.2 942,675 - Pf6N2E2_810 0.32 -1.8 942,675 - Pf6N2E2_810 0.32 -0.2 942,675 - Pf6N2E2_810 0.32 +0.8 943,037 + Pf6N2E2_810 0.59 +0.8 943,038 - Pf6N2E2_810 0.59 +0.8 943,038 - Pf6N2E2_810 0.59 -0.8 943,038 - Pf6N2E2_810 0.59 +0.8
Or see this region's nucleotide sequence