Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_805

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_804 and Pf6N2E2_805 are separated by 12 nucleotidesPf6N2E2_805 and Pf6N2E2_806 are separated by 206 nucleotides Pf6N2E2_804 - Fructokinase (EC 2.7.1.4), at 935,037 to 935,975 _804 Pf6N2E2_805 - Xylulose kinase (EC 2.7.1.17) (from data), at 935,988 to 937,475 _805 Pf6N2E2_806 - Multiple polyol-specific dehydrogenase (EC 1.1.1.-), at 937,682 to 939,163 _806 Position (kb) 935 936 937 938Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 935.056 kb on + strandat 935.214 kb on - strand, within Pf6N2E2_804at 935.383 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.429 kb on - strand, within Pf6N2E2_804at 935.429 kb on - strand, within Pf6N2E2_804at 935.625 kb on + strand, within Pf6N2E2_804at 935.677 kb on + strand, within Pf6N2E2_804at 935.678 kb on - strand, within Pf6N2E2_804at 935.800 kb on + strand, within Pf6N2E2_804at 935.800 kb on + strand, within Pf6N2E2_804at 935.801 kb on - strand, within Pf6N2E2_804at 935.896 kb on + strandat 935.896 kb on + strandat 935.896 kb on + strandat 935.897 kb on - strandat 935.897 kb on - strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.972 kb on - strandat 935.972 kb on - strandat 935.972 kb on - strandat 935.972 kb on - strandat 935.975 kb on + strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.081 kb on + strandat 936.082 kb on - strandat 936.313 kb on + strand, within Pf6N2E2_805at 936.646 kb on + strand, within Pf6N2E2_805at 936.647 kb on - strand, within Pf6N2E2_805at 936.647 kb on - strand, within Pf6N2E2_805at 936.652 kb on + strand, within Pf6N2E2_805at 936.652 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.971 kb on - strand, within Pf6N2E2_805at 937.018 kb on - strand, within Pf6N2E2_805at 937.536 kb on + strandat 937.536 kb on + strandat 937.536 kb on + strandat 937.536 kb on + strandat 937.537 kb on - strandat 937.537 kb on - strandat 937.537 kb on - strandat 937.602 kb on - strandat 937.602 kb on - strandat 937.894 kb on - strand, within Pf6N2E2_806at 937.894 kb on - strand, within Pf6N2E2_806at 937.894 kb on - strand, within Pf6N2E2_806at 937.894 kb on - strand, within Pf6N2E2_806at 937.926 kb on + strand, within Pf6N2E2_806at 937.926 kb on + strand, within Pf6N2E2_806at 937.927 kb on - strand, within Pf6N2E2_806at 937.927 kb on - strand, within Pf6N2E2_806at 937.927 kb on - strand, within Pf6N2E2_806at 937.929 kb on - strand, within Pf6N2E2_806at 938.103 kb on + strand, within Pf6N2E2_806at 938.163 kb on + strand, within Pf6N2E2_806at 938.163 kb on + strand, within Pf6N2E2_806at 938.163 kb on + strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.164 kb on - strand, within Pf6N2E2_806at 938.175 kb on + strand, within Pf6N2E2_806at 938.175 kb on + strand, within Pf6N2E2_806at 938.175 kb on + strand, within Pf6N2E2_806at 938.176 kb on - strand, within Pf6N2E2_806at 938.293 kb on - strand, within Pf6N2E2_806at 938.293 kb on - strand, within Pf6N2E2_806

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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935,056 + +0.8
935,214 - Pf6N2E2_804 0.19 +0.8
935,383 + Pf6N2E2_804 0.37 +0.8
935,428 + Pf6N2E2_804 0.42 -0.2
935,428 + Pf6N2E2_804 0.42 +0.8
935,428 + Pf6N2E2_804 0.42 +0.8
935,428 + Pf6N2E2_804 0.42 +0.8
935,428 + Pf6N2E2_804 0.42 +0.8
935,428 + Pf6N2E2_804 0.42 +0.8
935,429 - Pf6N2E2_804 0.42 +0.8
935,429 - Pf6N2E2_804 0.42 -0.2
935,625 + Pf6N2E2_804 0.63 -1.4
935,677 + Pf6N2E2_804 0.68 -0.9
935,678 - Pf6N2E2_804 0.68 +0.8
935,800 + Pf6N2E2_804 0.81 +0.8
935,800 + Pf6N2E2_804 0.81 +0.8
935,801 - Pf6N2E2_804 0.81 +0.8
935,896 + +0.8
935,896 + -0.2
935,896 + +0.8
935,897 - +0.8
935,897 - +0.8
935,971 + -1.2
935,971 + -1.6
935,971 + -0.2
935,971 + +0.8
935,971 + +0.8
935,972 - +0.8
935,972 - +0.8
935,972 - -1.7
935,972 - +0.8
935,975 + -0.5
935,976 - -2.4
935,976 - -1.0
935,976 - -0.2
935,976 - +0.8
935,976 - -2.0
935,976 - +0.8
936,022 + +0.8
936,022 + +0.8
936,022 + -2.7
936,022 + +0.8
936,022 + -0.2
936,022 + +0.8
936,023 - +0.8
936,023 - +0.8
936,023 - +0.8
936,023 - +0.8
936,023 - -0.2
936,081 + -0.4
936,082 - +0.8
936,313 + Pf6N2E2_805 0.22 +0.8
936,646 + Pf6N2E2_805 0.44 -2.5
936,647 - Pf6N2E2_805 0.44 +0.8
936,647 - Pf6N2E2_805 0.44 -2.4
936,652 + Pf6N2E2_805 0.45 +0.8
936,652 + Pf6N2E2_805 0.45 -2.8
936,876 + Pf6N2E2_805 0.60 -0.2
936,876 + Pf6N2E2_805 0.60 +0.8
936,876 + Pf6N2E2_805 0.60 -0.2
936,906 + Pf6N2E2_805 0.62 -3.2
936,906 + Pf6N2E2_805 0.62 +0.8
936,906 + Pf6N2E2_805 0.62 +0.8
936,906 + Pf6N2E2_805 0.62 +0.8
936,907 - Pf6N2E2_805 0.62 -2.2
936,907 - Pf6N2E2_805 0.62 +0.8
936,907 - Pf6N2E2_805 0.62 -3.4
936,907 - Pf6N2E2_805 0.62 -0.2
936,970 + Pf6N2E2_805 0.66 +0.8
936,970 + Pf6N2E2_805 0.66 -1.2
936,970 + Pf6N2E2_805 0.66 +0.8
936,970 + Pf6N2E2_805 0.66 +0.8
936,970 + Pf6N2E2_805 0.66 -0.8
936,970 + Pf6N2E2_805 0.66 -2.5
936,971 - Pf6N2E2_805 0.66 -1.1
937,018 - Pf6N2E2_805 0.69 +0.8
937,536 + -1.2
937,536 + +0.8
937,536 + -0.8
937,536 + +0.8
937,537 - -1.6
937,537 - +0.8
937,537 - +0.8
937,602 - +0.8
937,602 - -0.9
937,894 - Pf6N2E2_806 0.14 +0.8
937,894 - Pf6N2E2_806 0.14 -6.7
937,894 - Pf6N2E2_806 0.14 +0.8
937,894 - Pf6N2E2_806 0.14 -0.2
937,926 + Pf6N2E2_806 0.16 -0.2
937,926 + Pf6N2E2_806 0.16 -5.7
937,927 - Pf6N2E2_806 0.17 +0.8
937,927 - Pf6N2E2_806 0.17 -7.0
937,927 - Pf6N2E2_806 0.17 +0.8
937,929 - Pf6N2E2_806 0.17 -1.2
938,103 + Pf6N2E2_806 0.28 +0.8
938,163 + Pf6N2E2_806 0.32 +0.8
938,163 + Pf6N2E2_806 0.32 -0.2
938,163 + Pf6N2E2_806 0.32 -2.0
938,164 - Pf6N2E2_806 0.33 -0.2
938,164 - Pf6N2E2_806 0.33 -0.2
938,164 - Pf6N2E2_806 0.33 -4.4
938,164 - Pf6N2E2_806 0.33 -0.2
938,164 - Pf6N2E2_806 0.33 +1.8
938,175 + Pf6N2E2_806 0.33 +0.8
938,175 + Pf6N2E2_806 0.33 -0.2
938,175 + Pf6N2E2_806 0.33 -0.8
938,176 - Pf6N2E2_806 0.33 +0.8
938,293 - Pf6N2E2_806 0.41 +0.8
938,293 - Pf6N2E2_806 0.41 +0.8

Or see this region's nucleotide sequence