Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_558 and Pf6N2E2_559 are separated by 18 nucleotides Pf6N2E2_559 and Pf6N2E2_560 overlap by 4 nucleotides
Pf6N2E2_558 - Uncharacterized protein ImpJ/VasE, at 628,613 to 629,944
_558
Pf6N2E2_559 - Inner membrane protein DotU, at 629,963 to 630,727
_559
Pf6N2E2_560 - IcmF-related protein, at 630,724 to 634,548
_560
Position (kb) 629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 629.156 kb on + strand, within Pf6N2E2_558 at 629.393 kb on + strand, within Pf6N2E2_558 at 629.394 kb on - strand, within Pf6N2E2_558 at 629.786 kb on + strand, within Pf6N2E2_558 at 629.786 kb on + strand, within Pf6N2E2_558 at 629.787 kb on - strand, within Pf6N2E2_558 at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.963 kb on - strand at 630.090 kb on + strand, within Pf6N2E2_559 at 630.201 kb on - strand, within Pf6N2E2_559 at 630.201 kb on - strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.343 kb on - strand, within Pf6N2E2_559 at 630.387 kb on - strand, within Pf6N2E2_559 at 630.503 kb on + strand, within Pf6N2E2_559 at 630.503 kb on + strand, within Pf6N2E2_559 at 630.503 kb on + strand, within Pf6N2E2_559 at 630.839 kb on - strand at 631.255 kb on + strand, within Pf6N2E2_560 at 631.255 kb on + strand, within Pf6N2E2_560 at 631.255 kb on + strand, within Pf6N2E2_560 at 631.255 kb on + strand, within Pf6N2E2_560 at 631.255 kb on + strand, within Pf6N2E2_560 at 631.256 kb on - strand, within Pf6N2E2_560 at 631.256 kb on - strand, within Pf6N2E2_560 at 631.256 kb on - strand, within Pf6N2E2_560 at 631.357 kb on + strand, within Pf6N2E2_560 at 631.357 kb on + strand, within Pf6N2E2_560 at 631.358 kb on - strand, within Pf6N2E2_560 at 631.588 kb on + strand, within Pf6N2E2_560 at 631.588 kb on + strand, within Pf6N2E2_560 at 631.588 kb on + strand, within Pf6N2E2_560 at 631.588 kb on + strand, within Pf6N2E2_560 at 631.588 kb on + strand, within Pf6N2E2_560 at 631.588 kb on + strand, within Pf6N2E2_560 at 631.589 kb on - strand, within Pf6N2E2_560 at 631.589 kb on - strand, within Pf6N2E2_560
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 629,156 + Pf6N2E2_558 0.41 -1.8 629,393 + Pf6N2E2_558 0.59 -0.8 629,394 - Pf6N2E2_558 0.59 -0.2 629,786 + Pf6N2E2_558 0.88 +0.8 629,786 + Pf6N2E2_558 0.88 +0.8 629,787 - Pf6N2E2_558 0.88 -2.2 629,962 + -0.2 629,962 + -2.9 629,962 + -0.2 629,962 + +0.8 629,962 + -1.5 629,962 + +0.8 629,962 + -2.2 629,962 + +0.8 629,963 - +0.8 630,090 + Pf6N2E2_559 0.17 -2.9 630,201 - Pf6N2E2_559 0.31 -1.9 630,201 - Pf6N2E2_559 0.31 +0.8 630,293 + Pf6N2E2_559 0.43 -2.4 630,293 + Pf6N2E2_559 0.43 +0.8 630,293 + Pf6N2E2_559 0.43 -0.8 630,293 + Pf6N2E2_559 0.43 -2.3 630,293 + Pf6N2E2_559 0.43 -0.2 630,294 - Pf6N2E2_559 0.43 -0.8 630,294 - Pf6N2E2_559 0.43 +0.8 630,294 - Pf6N2E2_559 0.43 -0.2 630,294 - Pf6N2E2_559 0.43 +0.8 630,294 - Pf6N2E2_559 0.43 +0.8 630,294 - Pf6N2E2_559 0.43 -0.2 630,294 - Pf6N2E2_559 0.43 -0.2 630,294 - Pf6N2E2_559 0.43 -0.5 630,343 - Pf6N2E2_559 0.50 +0.8 630,387 - Pf6N2E2_559 0.55 +0.8 630,503 + Pf6N2E2_559 0.71 +0.8 630,503 + Pf6N2E2_559 0.71 -0.2 630,503 + Pf6N2E2_559 0.71 +0.8 630,839 - +0.8 631,255 + Pf6N2E2_560 0.14 +0.8 631,255 + Pf6N2E2_560 0.14 +0.8 631,255 + Pf6N2E2_560 0.14 -2.7 631,255 + Pf6N2E2_560 0.14 -0.2 631,255 + Pf6N2E2_560 0.14 -0.2 631,256 - Pf6N2E2_560 0.14 -1.1 631,256 - Pf6N2E2_560 0.14 -2.2 631,256 - Pf6N2E2_560 0.14 -3.0 631,357 + Pf6N2E2_560 0.17 +0.8 631,357 + Pf6N2E2_560 0.17 -0.8 631,358 - Pf6N2E2_560 0.17 +0.8 631,588 + Pf6N2E2_560 0.23 -1.8 631,588 + Pf6N2E2_560 0.23 -0.2 631,588 + Pf6N2E2_560 0.23 +0.8 631,588 + Pf6N2E2_560 0.23 +0.8 631,588 + Pf6N2E2_560 0.23 +0.8 631,588 + Pf6N2E2_560 0.23 +0.8 631,589 - Pf6N2E2_560 0.23 -1.0 631,589 - Pf6N2E2_560 0.23 -0.8
Or see this region's nucleotide sequence