Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_523 and Pf6N2E2_524 are separated by 148 nucleotides Pf6N2E2_524 and Pf6N2E2_525 are separated by 327 nucleotides Pf6N2E2_525 and Pf6N2E2_526 are separated by 171 nucleotides
Pf6N2E2_523 - Inositol transport system ATP-binding protein, at 591,944 to 593,497
_523
Pf6N2E2_524 - Inositol transport system permease protein, at 593,646 to 594,668
_524
Pf6N2E2_525 - C4-type zinc finger protein, DksA/TraR family, at 594,996 to 595,400
_525
Pf6N2E2_526 - Methyl-accepting chemotaxis protein, at 595,572 to 597,185
_526
Position (kb) 593
594
595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 592.664 kb on + strand, within Pf6N2E2_523 at 592.664 kb on + strand, within Pf6N2E2_523 at 592.664 kb on + strand, within Pf6N2E2_523 at 592.664 kb on + strand, within Pf6N2E2_523 at 592.664 kb on + strand, within Pf6N2E2_523 at 592.665 kb on - strand, within Pf6N2E2_523 at 592.665 kb on - strand, within Pf6N2E2_523 at 592.665 kb on - strand, within Pf6N2E2_523 at 592.665 kb on - strand, within Pf6N2E2_523 at 592.665 kb on - strand, within Pf6N2E2_523 at 592.665 kb on - strand, within Pf6N2E2_523 at 592.924 kb on + strand, within Pf6N2E2_523 at 592.963 kb on + strand, within Pf6N2E2_523 at 593.087 kb on + strand, within Pf6N2E2_523 at 593.087 kb on + strand, within Pf6N2E2_523 at 593.087 kb on + strand, within Pf6N2E2_523 at 593.087 kb on + strand, within Pf6N2E2_523 at 593.088 kb on - strand, within Pf6N2E2_523 at 593.312 kb on + strand, within Pf6N2E2_523 at 593.312 kb on + strand, within Pf6N2E2_523 at 593.327 kb on + strand, within Pf6N2E2_523 at 593.328 kb on - strand, within Pf6N2E2_523 at 593.328 kb on - strand, within Pf6N2E2_523 at 593.383 kb on - strand at 593.515 kb on + strand at 593.515 kb on + strand at 593.515 kb on + strand at 593.515 kb on + strand at 593.516 kb on - strand at 593.549 kb on - strand at 593.645 kb on + strand at 593.646 kb on - strand at 593.720 kb on + strand at 593.720 kb on + strand at 593.721 kb on - strand at 593.721 kb on - strand at 593.721 kb on - strand at 594.080 kb on + strand, within Pf6N2E2_524 at 594.141 kb on + strand, within Pf6N2E2_524 at 594.141 kb on + strand, within Pf6N2E2_524 at 594.141 kb on + strand, within Pf6N2E2_524 at 594.141 kb on + strand, within Pf6N2E2_524 at 594.141 kb on + strand, within Pf6N2E2_524 at 594.142 kb on - strand, within Pf6N2E2_524 at 594.142 kb on - strand, within Pf6N2E2_524 at 594.180 kb on + strand, within Pf6N2E2_524 at 594.180 kb on + strand, within Pf6N2E2_524 at 594.180 kb on + strand, within Pf6N2E2_524 at 594.181 kb on - strand, within Pf6N2E2_524 at 594.245 kb on + strand, within Pf6N2E2_524 at 594.268 kb on - strand, within Pf6N2E2_524 at 594.276 kb on + strand, within Pf6N2E2_524 at 594.276 kb on + strand, within Pf6N2E2_524 at 594.276 kb on + strand, within Pf6N2E2_524 at 594.277 kb on - strand, within Pf6N2E2_524 at 594.277 kb on - strand, within Pf6N2E2_524 at 594.277 kb on - strand, within Pf6N2E2_524 at 594.277 kb on - strand, within Pf6N2E2_524 at 594.277 kb on - strand, within Pf6N2E2_524 at 594.277 kb on - strand, within Pf6N2E2_524 at 594.282 kb on + strand, within Pf6N2E2_524 at 594.282 kb on + strand, within Pf6N2E2_524 at 594.282 kb on + strand, within Pf6N2E2_524 at 594.283 kb on - strand, within Pf6N2E2_524 at 594.354 kb on + strand, within Pf6N2E2_524 at 594.354 kb on + strand, within Pf6N2E2_524 at 594.355 kb on - strand, within Pf6N2E2_524 at 594.355 kb on - strand, within Pf6N2E2_524 at 594.355 kb on - strand, within Pf6N2E2_524 at 594.441 kb on + strand, within Pf6N2E2_524 at 594.441 kb on + strand, within Pf6N2E2_524 at 594.442 kb on - strand, within Pf6N2E2_524 at 594.442 kb on - strand, within Pf6N2E2_524 at 594.582 kb on + strand at 594.582 kb on + strand at 594.582 kb on + strand at 594.583 kb on - strand at 594.583 kb on - strand at 594.583 kb on - strand at 594.730 kb on + strand at 594.730 kb on + strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.733 kb on + strand at 594.734 kb on - strand at 594.734 kb on - strand at 594.734 kb on - strand at 594.734 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.760 kb on - strand at 594.760 kb on - strand at 594.761 kb on + strand at 594.762 kb on - strand at 594.762 kb on - strand at 594.909 kb on - strand at 594.991 kb on + strand at 594.991 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.187 kb on + strand, within Pf6N2E2_525 at 595.187 kb on + strand, within Pf6N2E2_525 at 595.256 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.342 kb on - strand, within Pf6N2E2_525 at 595.342 kb on - strand, within Pf6N2E2_525 at 595.342 kb on - strand, within Pf6N2E2_525 at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.477 kb on + strand at 595.477 kb on + strand at 595.477 kb on + strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.523 kb on - strand at 595.534 kb on - strand at 595.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 592,664 + Pf6N2E2_523 0.46 +0.8 592,664 + Pf6N2E2_523 0.46 -1.5 592,664 + Pf6N2E2_523 0.46 -3.7 592,664 + Pf6N2E2_523 0.46 -3.8 592,664 + Pf6N2E2_523 0.46 +0.8 592,665 - Pf6N2E2_523 0.46 -3.7 592,665 - Pf6N2E2_523 0.46 -2.1 592,665 - Pf6N2E2_523 0.46 -0.2 592,665 - Pf6N2E2_523 0.46 -0.2 592,665 - Pf6N2E2_523 0.46 -1.2 592,665 - Pf6N2E2_523 0.46 +0.8 592,924 + Pf6N2E2_523 0.63 -0.2 592,963 + Pf6N2E2_523 0.66 -0.2 593,087 + Pf6N2E2_523 0.74 -0.9 593,087 + Pf6N2E2_523 0.74 -2.3 593,087 + Pf6N2E2_523 0.74 -0.2 593,087 + Pf6N2E2_523 0.74 -2.0 593,088 - Pf6N2E2_523 0.74 -2.3 593,312 + Pf6N2E2_523 0.88 -1.5 593,312 + Pf6N2E2_523 0.88 -2.5 593,327 + Pf6N2E2_523 0.89 -3.3 593,328 - Pf6N2E2_523 0.89 -0.8 593,328 - Pf6N2E2_523 0.89 -1.2 593,383 - -2.6 593,515 + -0.2 593,515 + +0.8 593,515 + +0.8 593,515 + +0.8 593,516 - +0.8 593,549 - -2.8 593,645 + -3.6 593,646 - +0.8 593,720 + +0.8 593,720 + +0.8 593,721 - -0.8 593,721 - +0.8 593,721 - -0.2 594,080 + Pf6N2E2_524 0.42 -0.2 594,141 + Pf6N2E2_524 0.48 -1.2 594,141 + Pf6N2E2_524 0.48 +0.8 594,141 + Pf6N2E2_524 0.48 -0.2 594,141 + Pf6N2E2_524 0.48 -1.2 594,141 + Pf6N2E2_524 0.48 -0.2 594,142 - Pf6N2E2_524 0.48 -0.8 594,142 - Pf6N2E2_524 0.48 +0.8 594,180 + Pf6N2E2_524 0.52 -2.0 594,180 + Pf6N2E2_524 0.52 -4.5 594,180 + Pf6N2E2_524 0.52 +0.8 594,181 - Pf6N2E2_524 0.52 +0.8 594,245 + Pf6N2E2_524 0.59 -0.8 594,268 - Pf6N2E2_524 0.61 -0.2 594,276 + Pf6N2E2_524 0.62 -1.5 594,276 + Pf6N2E2_524 0.62 +0.4 594,276 + Pf6N2E2_524 0.62 -0.4 594,277 - Pf6N2E2_524 0.62 -4.4 594,277 - Pf6N2E2_524 0.62 +0.8 594,277 - Pf6N2E2_524 0.62 -0.5 594,277 - Pf6N2E2_524 0.62 +0.8 594,277 - Pf6N2E2_524 0.62 +0.8 594,277 - Pf6N2E2_524 0.62 -1.2 594,282 + Pf6N2E2_524 0.62 +0.8 594,282 + Pf6N2E2_524 0.62 -0.8 594,282 + Pf6N2E2_524 0.62 +0.8 594,283 - Pf6N2E2_524 0.62 +0.8 594,354 + Pf6N2E2_524 0.69 -3.5 594,354 + Pf6N2E2_524 0.69 -0.2 594,355 - Pf6N2E2_524 0.69 +0.8 594,355 - Pf6N2E2_524 0.69 -1.8 594,355 - Pf6N2E2_524 0.69 -2.5 594,441 + Pf6N2E2_524 0.78 -3.7 594,441 + Pf6N2E2_524 0.78 +0.8 594,442 - Pf6N2E2_524 0.78 +0.8 594,442 - Pf6N2E2_524 0.78 +0.8 594,582 + -2.6 594,582 + +0.8 594,582 + +0.8 594,583 - -0.8 594,583 - +0.8 594,583 - -2.7 594,730 + -1.3 594,730 + +0.8 594,731 - +0.8 594,731 - +0.8 594,731 - -2.0 594,731 - -0.8 594,731 - +0.8 594,731 - +0.8 594,733 + +0.8 594,734 - -0.4 594,734 - +0.8 594,734 - +0.8 594,734 - +0.8 594,740 - +0.8 594,740 - -1.8 594,740 - -0.2 594,740 - -2.0 594,740 - -1.3 594,740 - -2.3 594,740 - -0.8 594,740 - -0.7 594,760 - -0.2 594,760 - +0.8 594,761 + -0.2 594,762 - +0.8 594,762 - -0.2 594,909 - -0.4 594,991 + -0.2 594,991 + +0.8 595,035 + -1.5 595,035 + +0.8 595,035 + -1.7 595,035 + -1.7 595,035 + +0.8 595,035 + -1.5 595,187 + Pf6N2E2_525 0.47 -0.8 595,187 + Pf6N2E2_525 0.47 -1.9 595,256 + Pf6N2E2_525 0.64 -1.9 595,341 + Pf6N2E2_525 0.85 -2.0 595,341 + Pf6N2E2_525 0.85 -1.4 595,341 + Pf6N2E2_525 0.85 -1.7 595,341 + Pf6N2E2_525 0.85 +0.8 595,341 + Pf6N2E2_525 0.85 -2.1 595,341 + Pf6N2E2_525 0.85 -2.9 595,342 - Pf6N2E2_525 0.85 +0.8 595,342 - Pf6N2E2_525 0.85 -1.6 595,342 - Pf6N2E2_525 0.85 +0.8 595,471 + -1.3 595,471 + +0.8 595,471 + +0.8 595,471 + -0.5 595,471 + -1.5 595,471 + +0.8 595,471 + -3.0 595,471 + +0.8 595,471 + -0.2 595,472 - +0.8 595,472 - +0.8 595,472 - -2.9 595,472 - +0.8 595,472 - +0.8 595,472 - +0.8 595,472 - -1.2 595,477 + -1.2 595,477 + -0.4 595,477 + -0.8 595,478 - +0.8 595,478 - -0.8 595,478 - +0.8 595,478 - +0.8 595,478 - -0.2 595,478 - -1.7 595,478 - -2.1 595,523 - -2.0 595,534 - +0.8 595,555 - -0.2
Or see this region's nucleotide sequence