Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_516

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_515 and Pf6N2E2_516 are separated by 35 nucleotidesPf6N2E2_516 and Pf6N2E2_517 are separated by 148 nucleotides Pf6N2E2_515 - malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data), at 584,020 to 585,522 _515 Pf6N2E2_516 - Inosose isomerase (EC 5.3.99.-), at 585,558 to 586,379 _516 Pf6N2E2_517 - Epi-inositol hydrolase (EC 3.7.1.-) (from data), at 586,528 to 588,459 _517 Position (kb) 585 586 587Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 584.722 kb on + strand, within Pf6N2E2_515at 584.722 kb on + strand, within Pf6N2E2_515at 584.722 kb on + strand, within Pf6N2E2_515at 584.722 kb on + strand, within Pf6N2E2_515at 584.723 kb on - strand, within Pf6N2E2_515at 584.723 kb on - strand, within Pf6N2E2_515at 585.082 kb on - strand, within Pf6N2E2_515at 585.082 kb on - strand, within Pf6N2E2_515at 585.163 kb on + strand, within Pf6N2E2_515at 585.163 kb on + strand, within Pf6N2E2_515at 585.164 kb on - strand, within Pf6N2E2_515at 585.164 kb on - strand, within Pf6N2E2_515at 585.330 kb on - strand, within Pf6N2E2_515at 585.415 kb on + strandat 585.440 kb on - strandat 585.448 kb on + strandat 585.520 kb on + strandat 585.521 kb on - strandat 585.521 kb on - strandat 585.553 kb on + strandat 585.553 kb on + strandat 585.553 kb on + strandat 585.554 kb on - strandat 585.554 kb on - strandat 585.554 kb on - strandat 585.554 kb on - strandat 585.554 kb on - strandat 585.554 kb on - strandat 585.554 kb on - strandat 585.554 kb on - strandat 585.727 kb on + strand, within Pf6N2E2_516at 585.728 kb on - strand, within Pf6N2E2_516at 585.829 kb on - strand, within Pf6N2E2_516at 585.969 kb on + strand, within Pf6N2E2_516at 585.970 kb on - strand, within Pf6N2E2_516at 586.063 kb on + strand, within Pf6N2E2_516at 586.063 kb on + strand, within Pf6N2E2_516at 586.063 kb on + strand, within Pf6N2E2_516at 586.064 kb on - strand, within Pf6N2E2_516at 586.279 kb on - strand, within Pf6N2E2_516at 586.279 kb on - strand, within Pf6N2E2_516at 586.279 kb on - strand, within Pf6N2E2_516at 586.441 kb on - strandat 586.441 kb on - strandat 586.585 kb on + strandat 586.585 kb on + strandat 586.586 kb on - strandat 586.780 kb on + strand, within Pf6N2E2_517at 586.781 kb on - strand, within Pf6N2E2_517at 586.781 kb on - strand, within Pf6N2E2_517at 586.868 kb on + strand, within Pf6N2E2_517at 586.869 kb on - strandat 586.869 kb on - strand, within Pf6N2E2_517at 586.869 kb on - strand, within Pf6N2E2_517at 586.885 kb on + strand, within Pf6N2E2_517at 586.982 kb on - strand, within Pf6N2E2_517at 587.111 kb on - strand, within Pf6N2E2_517at 587.126 kb on - strand, within Pf6N2E2_517at 587.183 kb on + strand, within Pf6N2E2_517at 587.183 kb on + strand, within Pf6N2E2_517

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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584,722 + Pf6N2E2_515 0.47 +0.8
584,722 + Pf6N2E2_515 0.47 -3.8
584,722 + Pf6N2E2_515 0.47 +0.8
584,722 + Pf6N2E2_515 0.47 -2.4
584,723 - Pf6N2E2_515 0.47 +0.8
584,723 - Pf6N2E2_515 0.47 -2.7
585,082 - Pf6N2E2_515 0.71 -3.0
585,082 - Pf6N2E2_515 0.71 -3.3
585,163 + Pf6N2E2_515 0.76 -2.6
585,163 + Pf6N2E2_515 0.76 -1.2
585,164 - Pf6N2E2_515 0.76 -2.8
585,164 - Pf6N2E2_515 0.76 -0.2
585,330 - Pf6N2E2_515 0.87 -1.5
585,415 + +0.8
585,440 - -0.8
585,448 + -2.8
585,520 + -0.2
585,521 - +0.8
585,521 - +0.8
585,553 + +0.8
585,553 + -0.8
585,553 + -3.4
585,554 - +0.8
585,554 - +0.8
585,554 - -0.8
585,554 - -3.3
585,554 - -1.2
585,554 - +0.8
585,554 - -0.8
585,554 - -1.8
585,727 + Pf6N2E2_516 0.21 +0.4
585,728 - Pf6N2E2_516 0.21 -0.2
585,829 - Pf6N2E2_516 0.33 +0.8
585,969 + Pf6N2E2_516 0.50 +0.8
585,970 - Pf6N2E2_516 0.50 -0.2
586,063 + Pf6N2E2_516 0.61 +0.8
586,063 + Pf6N2E2_516 0.61 -0.2
586,063 + Pf6N2E2_516 0.61 -2.3
586,064 - Pf6N2E2_516 0.62 +0.8
586,279 - Pf6N2E2_516 0.88 +0.8
586,279 - Pf6N2E2_516 0.88 -3.7
586,279 - Pf6N2E2_516 0.88 -0.2
586,441 - +0.8
586,441 - +0.8
586,585 + +0.8
586,585 + +0.8
586,586 - -0.2
586,780 + Pf6N2E2_517 0.13 -0.2
586,781 - Pf6N2E2_517 0.13 +0.8
586,781 - Pf6N2E2_517 0.13 +0.8
586,868 + Pf6N2E2_517 0.18 +0.8
586,869 - +0.8
586,869 - Pf6N2E2_517 0.18 -1.6
586,869 - Pf6N2E2_517 0.18 +0.8
586,885 + Pf6N2E2_517 0.18 +0.8
586,982 - Pf6N2E2_517 0.23 -1.2
587,111 - Pf6N2E2_517 0.30 -1.9
587,126 - Pf6N2E2_517 0.31 +0.8
587,183 + Pf6N2E2_517 0.34 -2.9
587,183 + Pf6N2E2_517 0.34 +0.8

Or see this region's nucleotide sequence