Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5146

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5145 and Pf6N2E2_5146 are separated by 258 nucleotidesPf6N2E2_5146 and Pf6N2E2_5147 are separated by 0 nucleotides Pf6N2E2_5145 - Mobile element protein, at 5,928,758 to 5,929,705 _5145 Pf6N2E2_5146 - FIG00953066: hypothetical protein, at 5,929,964 to 5,930,260 _5146 Pf6N2E2_5147 - putative exported protein, at 5,930,261 to 5,933,194 _5147 Position (kb) 5929 5930 5931Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5929.901 kb on + strandat 5929.901 kb on + strandat 5929.901 kb on + strandat 5929.906 kb on + strandat 5929.906 kb on + strandat 5929.906 kb on + strandat 5929.906 kb on + strandat 5929.906 kb on + strandat 5929.906 kb on + strandat 5929.936 kb on + strandat 5929.936 kb on + strandat 5929.936 kb on + strandat 5929.937 kb on - strandat 5929.937 kb on - strandat 5929.937 kb on - strandat 5929.937 kb on - strandat 5930.019 kb on + strand, within Pf6N2E2_5146at 5930.019 kb on + strand, within Pf6N2E2_5146at 5930.020 kb on - strand, within Pf6N2E2_5146at 5930.025 kb on + strand, within Pf6N2E2_5146at 5930.025 kb on + strand, within Pf6N2E2_5146at 5930.025 kb on + strand, within Pf6N2E2_5146at 5930.025 kb on + strand, within Pf6N2E2_5146at 5930.025 kb on + strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.026 kb on - strand, within Pf6N2E2_5146at 5930.046 kb on + strand, within Pf6N2E2_5146at 5930.047 kb on - strand, within Pf6N2E2_5146at 5930.098 kb on - strand, within Pf6N2E2_5146at 5930.098 kb on - strand, within Pf6N2E2_5146at 5930.262 kb on + strandat 5930.263 kb on - strandat 5930.263 kb on - strandat 5930.337 kb on + strandat 5930.338 kb on - strandat 5930.338 kb on - strandat 5930.338 kb on - strandat 5930.390 kb on - strandat 5930.485 kb on + strandat 5930.535 kb on + strandat 5930.536 kb on - strandat 5930.536 kb on - strandat 5930.536 kb on - strandat 5930.580 kb on - strand, within Pf6N2E2_5147at 5930.580 kb on - strand, within Pf6N2E2_5147at 5930.580 kb on - strand, within Pf6N2E2_5147at 5930.632 kb on - strand, within Pf6N2E2_5147at 5930.632 kb on - strand, within Pf6N2E2_5147at 5930.632 kb on - strand, within Pf6N2E2_5147at 5930.632 kb on - strand, within Pf6N2E2_5147at 5930.632 kb on - strand, within Pf6N2E2_5147at 5930.632 kb on - strand, within Pf6N2E2_5147at 5930.634 kb on + strand, within Pf6N2E2_5147at 5930.634 kb on + strand, within Pf6N2E2_5147at 5930.634 kb on + strand, within Pf6N2E2_5147at 5930.634 kb on + strand, within Pf6N2E2_5147at 5930.634 kb on + strand, within Pf6N2E2_5147at 5930.635 kb on - strand, within Pf6N2E2_5147at 5930.635 kb on - strand, within Pf6N2E2_5147at 5930.640 kb on + strand, within Pf6N2E2_5147at 5930.640 kb on + strand, within Pf6N2E2_5147at 5930.640 kb on + strand, within Pf6N2E2_5147at 5930.640 kb on + strand, within Pf6N2E2_5147at 5930.640 kb on + strand, within Pf6N2E2_5147at 5930.641 kb on - strand, within Pf6N2E2_5147at 5930.646 kb on + strand, within Pf6N2E2_5147at 5930.646 kb on + strand, within Pf6N2E2_5147at 5930.776 kb on + strand, within Pf6N2E2_5147at 5930.776 kb on + strand, within Pf6N2E2_5147at 5930.861 kb on - strand, within Pf6N2E2_5147at 5930.888 kb on + strand, within Pf6N2E2_5147at 5930.888 kb on + strand, within Pf6N2E2_5147at 5930.966 kb on + strand, within Pf6N2E2_5147at 5930.967 kb on - strand, within Pf6N2E2_5147

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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5,929,901 + +1.1
5,929,901 + -0.9
5,929,901 + +1.1
5,929,906 + -0.4
5,929,906 + +1.1
5,929,906 + +0.9
5,929,906 + +1.1
5,929,906 + +1.1
5,929,906 + +0.1
5,929,936 + +1.1
5,929,936 + +1.1
5,929,936 + -1.3
5,929,937 - -1.2
5,929,937 - +0.1
5,929,937 - +1.1
5,929,937 - -0.4
5,930,019 + Pf6N2E2_5146 0.19 +0.6
5,930,019 + Pf6N2E2_5146 0.19 -2.2
5,930,020 - Pf6N2E2_5146 0.19 +0.1
5,930,025 + Pf6N2E2_5146 0.21 +0.1
5,930,025 + Pf6N2E2_5146 0.21 +0.1
5,930,025 + Pf6N2E2_5146 0.21 +1.1
5,930,025 + Pf6N2E2_5146 0.21 +0.1
5,930,025 + Pf6N2E2_5146 0.21 -0.4
5,930,026 - Pf6N2E2_5146 0.21 +0.1
5,930,026 - Pf6N2E2_5146 0.21 -0.4
5,930,026 - Pf6N2E2_5146 0.21 +1.1
5,930,026 - Pf6N2E2_5146 0.21 +1.1
5,930,026 - Pf6N2E2_5146 0.21 -2.8
5,930,026 - Pf6N2E2_5146 0.21 +1.1
5,930,026 - Pf6N2E2_5146 0.21 -0.2
5,930,026 - Pf6N2E2_5146 0.21 -1.9
5,930,026 - Pf6N2E2_5146 0.21 -0.9
5,930,026 - Pf6N2E2_5146 0.21 -0.4
5,930,026 - Pf6N2E2_5146 0.21 +0.1
5,930,026 - Pf6N2E2_5146 0.21 -0.4
5,930,046 + Pf6N2E2_5146 0.28 +1.1
5,930,047 - Pf6N2E2_5146 0.28 +0.1
5,930,098 - Pf6N2E2_5146 0.45 +1.1
5,930,098 - Pf6N2E2_5146 0.45 -4.4
5,930,262 + -1.4
5,930,263 - +1.1
5,930,263 - -1.2
5,930,337 + +0.1
5,930,338 - +1.1
5,930,338 - -0.4
5,930,338 - -1.1
5,930,390 - -0.9
5,930,485 + +0.1
5,930,535 + -1.7
5,930,536 - +1.1
5,930,536 - +0.1
5,930,536 - -1.9
5,930,580 - Pf6N2E2_5147 0.11 -1.0
5,930,580 - Pf6N2E2_5147 0.11 -0.4
5,930,580 - Pf6N2E2_5147 0.11 -0.4
5,930,632 - Pf6N2E2_5147 0.13 +1.1
5,930,632 - Pf6N2E2_5147 0.13 +1.1
5,930,632 - Pf6N2E2_5147 0.13 -1.4
5,930,632 - Pf6N2E2_5147 0.13 -0.4
5,930,632 - Pf6N2E2_5147 0.13 -1.7
5,930,632 - Pf6N2E2_5147 0.13 +0.1
5,930,634 + Pf6N2E2_5147 0.13 +1.1
5,930,634 + Pf6N2E2_5147 0.13 +0.1
5,930,634 + Pf6N2E2_5147 0.13 +1.1
5,930,634 + Pf6N2E2_5147 0.13 -1.3
5,930,634 + Pf6N2E2_5147 0.13 -0.9
5,930,635 - Pf6N2E2_5147 0.13 +1.1
5,930,635 - Pf6N2E2_5147 0.13 +1.1
5,930,640 + Pf6N2E2_5147 0.13 +0.1
5,930,640 + Pf6N2E2_5147 0.13 -2.0
5,930,640 + Pf6N2E2_5147 0.13 +0.1
5,930,640 + Pf6N2E2_5147 0.13 +1.1
5,930,640 + Pf6N2E2_5147 0.13 +1.9
5,930,641 - Pf6N2E2_5147 0.13 -3.1
5,930,646 + Pf6N2E2_5147 0.13 +1.1
5,930,646 + Pf6N2E2_5147 0.13 +0.1
5,930,776 + Pf6N2E2_5147 0.18 -1.2
5,930,776 + Pf6N2E2_5147 0.18 +0.1
5,930,861 - Pf6N2E2_5147 0.20 -0.9
5,930,888 + Pf6N2E2_5147 0.21 +1.1
5,930,888 + Pf6N2E2_5147 0.21 -1.9
5,930,966 + Pf6N2E2_5147 0.24 +1.1
5,930,967 - Pf6N2E2_5147 0.24 +1.1

Or see this region's nucleotide sequence