Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_512

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_510 and Pf6N2E2_511 are separated by 211 nucleotidesPf6N2E2_511 and Pf6N2E2_512 overlap by 33 nucleotidesPf6N2E2_512 and Pf6N2E2_513 are separated by 194 nucleotides Pf6N2E2_510 - Predicted transcriptional regulator of the myo-inositol catabolic operon, at 578,921 to 579,844 _510 Pf6N2E2_511 - hypothetical protein, at 580,056 to 580,190 _511 Pf6N2E2_512 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data), at 580,158 to 582,095 _512 Pf6N2E2_513 - Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data), at 582,290 to 583,183 _513 Position (kb) 580 581 582 583Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 579.174 kb on + strand, within Pf6N2E2_510at 579.275 kb on - strand, within Pf6N2E2_510at 579.294 kb on + strand, within Pf6N2E2_510at 579.295 kb on - strand, within Pf6N2E2_510at 579.295 kb on - strand, within Pf6N2E2_510at 579.295 kb on - strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.342 kb on + strand, within Pf6N2E2_510at 579.343 kb on - strand, within Pf6N2E2_510at 579.343 kb on - strand, within Pf6N2E2_510at 579.343 kb on - strand, within Pf6N2E2_510at 579.343 kb on - strand, within Pf6N2E2_510at 579.343 kb on - strand, within Pf6N2E2_510at 579.343 kb on - strand, within Pf6N2E2_510at 579.343 kb on - strand, within Pf6N2E2_510at 579.346 kb on + strand, within Pf6N2E2_510at 579.346 kb on + strand, within Pf6N2E2_510at 579.346 kb on + strand, within Pf6N2E2_510at 579.346 kb on + strand, within Pf6N2E2_510at 579.346 kb on + strand, within Pf6N2E2_510at 579.346 kb on + strand, within Pf6N2E2_510at 579.346 kb on + strand, within Pf6N2E2_510at 579.347 kb on - strand, within Pf6N2E2_510at 579.347 kb on - strand, within Pf6N2E2_510at 579.347 kb on - strand, within Pf6N2E2_510at 579.347 kb on - strandat 579.516 kb on + strand, within Pf6N2E2_510at 579.516 kb on + strand, within Pf6N2E2_510at 579.517 kb on - strand, within Pf6N2E2_510at 579.517 kb on - strand, within Pf6N2E2_510at 579.546 kb on + strand, within Pf6N2E2_510at 579.546 kb on + strand, within Pf6N2E2_510at 579.546 kb on + strand, within Pf6N2E2_510at 579.547 kb on - strand, within Pf6N2E2_510at 579.547 kb on - strand, within Pf6N2E2_510at 579.547 kb on - strand, within Pf6N2E2_510at 579.696 kb on + strand, within Pf6N2E2_510at 579.696 kb on + strand, within Pf6N2E2_510at 579.696 kb on + strand, within Pf6N2E2_510at 579.696 kb on + strand, within Pf6N2E2_510at 579.697 kb on - strand, within Pf6N2E2_510at 579.697 kb on - strand, within Pf6N2E2_510at 579.697 kb on - strand, within Pf6N2E2_510at 579.735 kb on + strand, within Pf6N2E2_510at 579.736 kb on - strand, within Pf6N2E2_510at 579.736 kb on - strand, within Pf6N2E2_510at 579.844 kb on + strandat 579.844 kb on + strandat 579.845 kb on - strandat 579.868 kb on + strandat 579.869 kb on - strandat 579.904 kb on + strandat 579.904 kb on + strandat 579.904 kb on + strandat 579.904 kb on + strandat 579.905 kb on - strandat 579.905 kb on - strandat 579.905 kb on - strandat 579.905 kb on - strandat 579.905 kb on - strandat 579.905 kb on - strandat 579.925 kb on - strandat 579.925 kb on - strandat 580.084 kb on - strand, within Pf6N2E2_511at 580.282 kb on - strandat 580.617 kb on + strand, within Pf6N2E2_512at 580.617 kb on + strand, within Pf6N2E2_512at 580.618 kb on - strand, within Pf6N2E2_512at 580.644 kb on + strand, within Pf6N2E2_512at 580.645 kb on - strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.768 kb on + strand, within Pf6N2E2_512at 580.769 kb on - strand, within Pf6N2E2_512at 580.769 kb on - strand, within Pf6N2E2_512at 580.769 kb on - strand, within Pf6N2E2_512at 580.769 kb on - strand, within Pf6N2E2_512at 580.769 kb on - strand, within Pf6N2E2_512at 580.769 kb on - strand, within Pf6N2E2_512at 580.999 kb on + strand, within Pf6N2E2_512at 581.000 kb on - strand, within Pf6N2E2_512at 581.000 kb on - strand, within Pf6N2E2_512at 581.157 kb on + strand, within Pf6N2E2_512at 581.157 kb on + strand, within Pf6N2E2_512at 581.158 kb on - strand, within Pf6N2E2_512at 581.161 kb on + strand, within Pf6N2E2_512at 581.161 kb on + strand, within Pf6N2E2_512at 581.161 kb on + strand, within Pf6N2E2_512at 581.161 kb on + strand, within Pf6N2E2_512at 581.162 kb on - strand, within Pf6N2E2_512at 581.162 kb on - strand, within Pf6N2E2_512at 581.162 kb on - strand, within Pf6N2E2_512at 581.162 kb on - strand, within Pf6N2E2_512at 581.162 kb on - strand, within Pf6N2E2_512at 581.293 kb on + strand, within Pf6N2E2_512at 581.500 kb on + strand, within Pf6N2E2_512at 581.501 kb on - strand, within Pf6N2E2_512at 581.658 kb on + strand, within Pf6N2E2_512at 581.658 kb on + strand, within Pf6N2E2_512at 581.658 kb on + strand, within Pf6N2E2_512at 581.658 kb on + strand, within Pf6N2E2_512at 581.659 kb on - strand, within Pf6N2E2_512at 581.659 kb on - strand, within Pf6N2E2_512at 581.659 kb on - strand, within Pf6N2E2_512at 581.746 kb on - strand, within Pf6N2E2_512at 581.767 kb on - strand, within Pf6N2E2_512at 581.778 kb on - strand, within Pf6N2E2_512at 582.099 kb on + strandat 582.100 kb on - strandat 582.100 kb on - strandat 582.263 kb on + strandat 582.263 kb on + strandat 582.264 kb on - strandat 582.264 kb on - strandat 582.264 kb on - strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.275 kb on + strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.276 kb on - strandat 582.473 kb on + strand, within Pf6N2E2_513at 582.501 kb on - strand, within Pf6N2E2_513at 582.735 kb on + strand, within Pf6N2E2_513at 582.747 kb on - strand, within Pf6N2E2_513at 582.747 kb on - strand, within Pf6N2E2_513at 582.767 kb on + strand, within Pf6N2E2_513at 582.768 kb on - strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.851 kb on + strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 582.852 kb on - strand, within Pf6N2E2_513at 583.064 kb on + strand, within Pf6N2E2_513

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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579,174 + Pf6N2E2_510 0.27 -0.2
579,275 - Pf6N2E2_510 0.38 -0.8
579,294 + Pf6N2E2_510 0.40 -1.5
579,295 - Pf6N2E2_510 0.40 -0.2
579,295 - Pf6N2E2_510 0.40 -1.2
579,295 - Pf6N2E2_510 0.40 +0.8
579,342 + Pf6N2E2_510 0.46 +0.8
579,342 + Pf6N2E2_510 0.46 +0.8
579,342 + Pf6N2E2_510 0.46 +0.8
579,342 + Pf6N2E2_510 0.46 +0.8
579,342 + Pf6N2E2_510 0.46 -0.8
579,342 + Pf6N2E2_510 0.46 -0.2
579,342 + Pf6N2E2_510 0.46 +0.8
579,342 + Pf6N2E2_510 0.46 -1.2
579,342 + Pf6N2E2_510 0.46 -0.2
579,343 - Pf6N2E2_510 0.46 +0.8
579,343 - Pf6N2E2_510 0.46 -0.2
579,343 - Pf6N2E2_510 0.46 -0.2
579,343 - Pf6N2E2_510 0.46 +0.8
579,343 - Pf6N2E2_510 0.46 -0.8
579,343 - Pf6N2E2_510 0.46 +0.8
579,343 - Pf6N2E2_510 0.46 +0.8
579,346 + Pf6N2E2_510 0.46 -0.2
579,346 + Pf6N2E2_510 0.46 +0.8
579,346 + Pf6N2E2_510 0.46 -0.8
579,346 + Pf6N2E2_510 0.46 +0.8
579,346 + Pf6N2E2_510 0.46 +0.8
579,346 + Pf6N2E2_510 0.46 +0.8
579,346 + Pf6N2E2_510 0.46 -0.8
579,347 - Pf6N2E2_510 0.46 -1.5
579,347 - Pf6N2E2_510 0.46 +0.8
579,347 - Pf6N2E2_510 0.46 +0.8
579,347 - +0.8
579,516 + Pf6N2E2_510 0.64 -1.2
579,516 + Pf6N2E2_510 0.64 +0.8
579,517 - Pf6N2E2_510 0.65 +0.8
579,517 - Pf6N2E2_510 0.65 +0.8
579,546 + Pf6N2E2_510 0.68 -2.2
579,546 + Pf6N2E2_510 0.68 +0.8
579,546 + Pf6N2E2_510 0.68 -0.2
579,547 - Pf6N2E2_510 0.68 -2.2
579,547 - Pf6N2E2_510 0.68 -1.5
579,547 - Pf6N2E2_510 0.68 +0.8
579,696 + Pf6N2E2_510 0.84 +0.8
579,696 + Pf6N2E2_510 0.84 -1.2
579,696 + Pf6N2E2_510 0.84 -1.8
579,696 + Pf6N2E2_510 0.84 -1.0
579,697 - Pf6N2E2_510 0.84 +0.8
579,697 - Pf6N2E2_510 0.84 +0.8
579,697 - Pf6N2E2_510 0.84 -2.4
579,735 + Pf6N2E2_510 0.88 -0.2
579,736 - Pf6N2E2_510 0.88 +0.8
579,736 - Pf6N2E2_510 0.88 -0.2
579,844 + +0.8
579,844 + -1.4
579,845 - +0.8
579,868 + +2.2
579,869 - -0.2
579,904 + -0.8
579,904 + -1.5
579,904 + +0.2
579,904 + +0.2
579,905 - +0.8
579,905 - -0.2
579,905 - -0.2
579,905 - +0.8
579,905 - +0.8
579,905 - +0.8
579,925 - +0.8
579,925 - -1.8
580,084 - Pf6N2E2_511 0.21 -3.2
580,282 - -2.3
580,617 + Pf6N2E2_512 0.24 -1.3
580,617 + Pf6N2E2_512 0.24 +0.8
580,618 - Pf6N2E2_512 0.24 -3.6
580,644 + Pf6N2E2_512 0.25 +0.8
580,645 - Pf6N2E2_512 0.25 -0.8
580,768 + Pf6N2E2_512 0.31 +0.8
580,768 + Pf6N2E2_512 0.31 -0.2
580,768 + Pf6N2E2_512 0.31 +0.8
580,768 + Pf6N2E2_512 0.31 -3.6
580,768 + Pf6N2E2_512 0.31 -0.2
580,768 + Pf6N2E2_512 0.31 +0.8
580,768 + Pf6N2E2_512 0.31 -0.2
580,768 + Pf6N2E2_512 0.31 -1.6
580,769 - Pf6N2E2_512 0.32 +0.8
580,769 - Pf6N2E2_512 0.32 +0.8
580,769 - Pf6N2E2_512 0.32 +0.8
580,769 - Pf6N2E2_512 0.32 +0.8
580,769 - Pf6N2E2_512 0.32 +0.8
580,769 - Pf6N2E2_512 0.32 +0.8
580,999 + Pf6N2E2_512 0.43 +0.8
581,000 - Pf6N2E2_512 0.43 +0.8
581,000 - Pf6N2E2_512 0.43 -1.2
581,157 + Pf6N2E2_512 0.52 +0.8
581,157 + Pf6N2E2_512 0.52 +0.8
581,158 - Pf6N2E2_512 0.52 -3.2
581,161 + Pf6N2E2_512 0.52 -0.8
581,161 + Pf6N2E2_512 0.52 -1.8
581,161 + Pf6N2E2_512 0.52 +0.8
581,161 + Pf6N2E2_512 0.52 +0.8
581,162 - Pf6N2E2_512 0.52 -0.8
581,162 - Pf6N2E2_512 0.52 -3.1
581,162 - Pf6N2E2_512 0.52 +0.8
581,162 - Pf6N2E2_512 0.52 -1.0
581,162 - Pf6N2E2_512 0.52 +0.8
581,293 + Pf6N2E2_512 0.59 +0.8
581,500 + Pf6N2E2_512 0.69 -2.0
581,501 - Pf6N2E2_512 0.69 +0.8
581,658 + Pf6N2E2_512 0.77 +0.8
581,658 + Pf6N2E2_512 0.77 -0.8
581,658 + Pf6N2E2_512 0.77 -1.5
581,658 + Pf6N2E2_512 0.77 -3.6
581,659 - Pf6N2E2_512 0.77 -2.2
581,659 - Pf6N2E2_512 0.77 -2.3
581,659 - Pf6N2E2_512 0.77 -0.8
581,746 - Pf6N2E2_512 0.82 -3.1
581,767 - Pf6N2E2_512 0.83 -0.2
581,778 - Pf6N2E2_512 0.84 -3.4
582,099 + -0.2
582,100 - -0.2
582,100 - +0.8
582,263 + -0.8
582,263 + -0.2
582,264 - -0.2
582,264 - -1.9
582,264 - -2.3
582,275 + -3.0
582,275 + -2.6
582,275 + +0.8
582,275 + -0.8
582,275 + +0.4
582,275 + +0.8
582,275 + +0.0
582,276 - -0.2
582,276 - -3.0
582,276 - -0.2
582,276 - +0.8
582,276 - +0.8
582,276 - -2.6
582,473 + Pf6N2E2_513 0.20 +0.8
582,501 - Pf6N2E2_513 0.24 +0.8
582,735 + Pf6N2E2_513 0.50 -0.2
582,747 - Pf6N2E2_513 0.51 -1.2
582,747 - Pf6N2E2_513 0.51 -0.2
582,767 + Pf6N2E2_513 0.53 +0.8
582,768 - Pf6N2E2_513 0.53 -0.2
582,851 + Pf6N2E2_513 0.63 -0.2
582,851 + Pf6N2E2_513 0.63 +0.8
582,851 + Pf6N2E2_513 0.63 -0.2
582,851 + Pf6N2E2_513 0.63 -0.2
582,851 + Pf6N2E2_513 0.63 -1.0
582,852 - Pf6N2E2_513 0.63 -0.2
582,852 - Pf6N2E2_513 0.63 -0.2
582,852 - Pf6N2E2_513 0.63 -0.8
582,852 - Pf6N2E2_513 0.63 -0.2
582,852 - Pf6N2E2_513 0.63 +0.8
582,852 - Pf6N2E2_513 0.63 +0.8
582,852 - Pf6N2E2_513 0.63 -0.8
583,064 + Pf6N2E2_513 0.87 -0.8

Or see this region's nucleotide sequence