Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4504

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4503 and Pf6N2E2_4504 are separated by 24 nucleotidesPf6N2E2_4504 and Pf6N2E2_4505 are separated by 7 nucleotidesPf6N2E2_4505 and Pf6N2E2_4506 overlap by 4 nucleotides Pf6N2E2_4503 - Alkanesulfonates-binding protein, at 5,235,131 to 5,236,096 _4503 Pf6N2E2_4504 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 5,236,121 to 5,237,269 _4504 Pf6N2E2_4505 - Alkanesulfonates transport system permease protein, at 5,237,277 to 5,238,059 _4505 Pf6N2E2_4506 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 5,238,056 to 5,238,862 _4506 Position (kb) 5236 5237 5238Strain fitness (log2 ratio) -3 -2 -1 0 1at 5235.199 kb on + strandat 5235.199 kb on + strandat 5235.200 kb on - strandat 5235.200 kb on - strandat 5235.200 kb on - strandat 5235.437 kb on + strand, within Pf6N2E2_4503at 5235.437 kb on + strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.438 kb on - strand, within Pf6N2E2_4503at 5235.446 kb on + strand, within Pf6N2E2_4503at 5235.446 kb on + strand, within Pf6N2E2_4503at 5235.447 kb on - strand, within Pf6N2E2_4503at 5235.447 kb on - strand, within Pf6N2E2_4503at 5235.447 kb on - strand, within Pf6N2E2_4503at 5235.564 kb on - strand, within Pf6N2E2_4503at 5235.564 kb on - strand, within Pf6N2E2_4503at 5235.602 kb on + strand, within Pf6N2E2_4503at 5235.773 kb on + strand, within Pf6N2E2_4503at 5235.774 kb on - strand, within Pf6N2E2_4503at 5235.792 kb on - strand, within Pf6N2E2_4503at 5235.891 kb on + strand, within Pf6N2E2_4503at 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.013 kb on + strandat 5236.014 kb on - strandat 5236.014 kb on - strandat 5236.014 kb on - strandat 5236.014 kb on - strandat 5236.094 kb on + strandat 5236.094 kb on + strandat 5236.094 kb on + strandat 5236.094 kb on + strandat 5236.095 kb on - strandat 5236.132 kb on + strandat 5236.169 kb on + strandat 5236.169 kb on + strandat 5236.169 kb on + strandat 5236.532 kb on - strand, within Pf6N2E2_4504at 5236.568 kb on + strand, within Pf6N2E2_4504at 5236.569 kb on - strand, within Pf6N2E2_4504at 5236.591 kb on + strand, within Pf6N2E2_4504at 5236.785 kb on + strand, within Pf6N2E2_4504at 5237.075 kb on + strand, within Pf6N2E2_4504at 5237.076 kb on - strand, within Pf6N2E2_4504at 5237.135 kb on + strand, within Pf6N2E2_4504at 5237.135 kb on + strand, within Pf6N2E2_4504at 5237.136 kb on - strand, within Pf6N2E2_4504at 5237.204 kb on + strandat 5237.204 kb on + strandat 5237.204 kb on + strandat 5237.204 kb on + strandat 5237.205 kb on - strandat 5237.205 kb on - strandat 5237.205 kb on - strandat 5237.205 kb on - strandat 5237.205 kb on - strandat 5237.239 kb on + strandat 5237.239 kb on + strandat 5237.240 kb on - strandat 5237.240 kb on - strandat 5237.324 kb on - strandat 5237.683 kb on - strand, within Pf6N2E2_4505at 5237.694 kb on + strand, within Pf6N2E2_4505at 5237.694 kb on + strand, within Pf6N2E2_4505at 5237.694 kb on + strand, within Pf6N2E2_4505at 5237.695 kb on - strand, within Pf6N2E2_4505at 5237.695 kb on - strand, within Pf6N2E2_4505at 5237.695 kb on - strand, within Pf6N2E2_4505at 5237.695 kb on - strand, within Pf6N2E2_4505at 5237.695 kb on - strand, within Pf6N2E2_4505at 5237.745 kb on + strand, within Pf6N2E2_4505at 5237.956 kb on - strand, within Pf6N2E2_4505at 5238.031 kb on - strandat 5238.131 kb on - strandat 5238.217 kb on + strand, within Pf6N2E2_4506at 5238.217 kb on + strand, within Pf6N2E2_4506at 5238.218 kb on - strand, within Pf6N2E2_4506at 5238.218 kb on - strand, within Pf6N2E2_4506at 5238.218 kb on - strand, within Pf6N2E2_4506

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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5,235,199 + -1.2
5,235,199 + -0.9
5,235,200 - +1.1
5,235,200 - +0.1
5,235,200 - +0.1
5,235,437 + Pf6N2E2_4503 0.32 +0.1
5,235,437 + Pf6N2E2_4503 0.32 +0.1
5,235,438 - Pf6N2E2_4503 0.32 -0.4
5,235,438 - Pf6N2E2_4503 0.32 +0.1
5,235,438 - Pf6N2E2_4503 0.32 +0.1
5,235,438 - Pf6N2E2_4503 0.32 -1.7
5,235,438 - Pf6N2E2_4503 0.32 -0.4
5,235,438 - Pf6N2E2_4503 0.32 -1.8
5,235,438 - Pf6N2E2_4503 0.32 +0.1
5,235,438 - Pf6N2E2_4503 0.32 +1.1
5,235,438 - Pf6N2E2_4503 0.32 -0.4
5,235,438 - Pf6N2E2_4503 0.32 +1.1
5,235,446 + Pf6N2E2_4503 0.33 +1.1
5,235,446 + Pf6N2E2_4503 0.33 +1.1
5,235,447 - Pf6N2E2_4503 0.33 +1.1
5,235,447 - Pf6N2E2_4503 0.33 +0.1
5,235,447 - Pf6N2E2_4503 0.33 +1.1
5,235,564 - Pf6N2E2_4503 0.45 -0.9
5,235,564 - Pf6N2E2_4503 0.45 +1.1
5,235,602 + Pf6N2E2_4503 0.49 +1.1
5,235,773 + Pf6N2E2_4503 0.66 +0.3
5,235,774 - Pf6N2E2_4503 0.67 +0.1
5,235,792 - Pf6N2E2_4503 0.68 +1.1
5,235,891 + Pf6N2E2_4503 0.79 +1.1
5,236,013 + -0.4
5,236,013 + +1.1
5,236,013 + -0.4
5,236,013 + +1.1
5,236,013 + +1.1
5,236,014 - +1.1
5,236,014 - +1.1
5,236,014 - +0.1
5,236,014 - -1.7
5,236,094 + -0.4
5,236,094 + -1.2
5,236,094 + -2.0
5,236,094 + +1.1
5,236,095 - +0.1
5,236,132 + +0.1
5,236,169 + -1.3
5,236,169 + +1.1
5,236,169 + +1.1
5,236,532 - Pf6N2E2_4504 0.36 -2.0
5,236,568 + Pf6N2E2_4504 0.39 -1.9
5,236,569 - Pf6N2E2_4504 0.39 -2.4
5,236,591 + Pf6N2E2_4504 0.41 +1.1
5,236,785 + Pf6N2E2_4504 0.58 -2.3
5,237,075 + Pf6N2E2_4504 0.83 -0.9
5,237,076 - Pf6N2E2_4504 0.83 +1.1
5,237,135 + Pf6N2E2_4504 0.88 +1.1
5,237,135 + Pf6N2E2_4504 0.88 -3.0
5,237,136 - Pf6N2E2_4504 0.88 -1.4
5,237,204 + -1.0
5,237,204 + -0.9
5,237,204 + -1.2
5,237,204 + -1.2
5,237,205 - +0.1
5,237,205 - -1.4
5,237,205 - -1.9
5,237,205 - +0.1
5,237,205 - +0.1
5,237,239 + -2.7
5,237,239 + +1.1
5,237,240 - +0.1
5,237,240 - -0.9
5,237,324 - -0.4
5,237,683 - Pf6N2E2_4505 0.52 +0.1
5,237,694 + Pf6N2E2_4505 0.53 +1.1
5,237,694 + Pf6N2E2_4505 0.53 -1.7
5,237,694 + Pf6N2E2_4505 0.53 -0.9
5,237,695 - Pf6N2E2_4505 0.53 -2.7
5,237,695 - Pf6N2E2_4505 0.53 +1.1
5,237,695 - Pf6N2E2_4505 0.53 +1.1
5,237,695 - Pf6N2E2_4505 0.53 -1.4
5,237,695 - Pf6N2E2_4505 0.53 -0.9
5,237,745 + Pf6N2E2_4505 0.60 +1.1
5,237,956 - Pf6N2E2_4505 0.87 +0.1
5,238,031 - +0.1
5,238,131 - +0.1
5,238,217 + Pf6N2E2_4506 0.20 +0.1
5,238,217 + Pf6N2E2_4506 0.20 -0.9
5,238,218 - Pf6N2E2_4506 0.20 +0.1
5,238,218 - Pf6N2E2_4506 0.20 -0.4
5,238,218 - Pf6N2E2_4506 0.20 +1.1

Or see this region's nucleotide sequence