Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4459 and Pf6N2E2_4460 are separated by 82 nucleotides Pf6N2E2_4460 and Pf6N2E2_4461 are separated by 241 nucleotides
Pf6N2E2_4459 - Transcriptional regulator, GntR family, at 5,191,284 to 5,191,991
_4459
Pf6N2E2_4460 - Thioredoxin, at 5,192,074 to 5,192,442
_4460
Pf6N2E2_4461 - Transcription termination factor Rho, at 5,192,684 to 5,193,943
_4461
Position (kb) 5192
5193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5191.190 kb on + strand at 5191.191 kb on - strand at 5191.239 kb on - strand at 5191.239 kb on - strand at 5191.239 kb on - strand at 5191.244 kb on + strand at 5191.244 kb on + strand at 5191.244 kb on + strand at 5191.244 kb on + strand at 5191.244 kb on + strand at 5191.244 kb on + strand at 5191.244 kb on + strand at 5191.244 kb on + strand at 5191.245 kb on - strand at 5191.245 kb on - strand at 5191.572 kb on - strand, within Pf6N2E2_4459 at 5191.822 kb on + strand, within Pf6N2E2_4459 at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.936 kb on + strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.940 kb on + strand at 5191.940 kb on + strand at 5191.999 kb on + strand at 5191.999 kb on + strand at 5191.999 kb on + strand at 5192.000 kb on - strand at 5192.000 kb on - strand at 5192.000 kb on - strand at 5192.000 kb on - strand at 5192.000 kb on - strand at 5192.009 kb on + strand at 5192.009 kb on + strand at 5192.009 kb on + strand at 5192.009 kb on + strand at 5192.009 kb on + strand at 5192.009 kb on + strand at 5192.010 kb on - strand at 5192.023 kb on + strand at 5192.440 kb on + strand at 5192.440 kb on + strand at 5192.440 kb on + strand at 5192.440 kb on + strand at 5192.440 kb on + strand at 5192.440 kb on + strand at 5192.440 kb on + strand at 5192.440 kb on + strand at 5192.441 kb on - strand at 5192.441 kb on - strand at 5192.441 kb on - strand at 5192.441 kb on - strand at 5192.441 kb on - strand at 5192.524 kb on + strand at 5192.591 kb on + strand at 5192.591 kb on + strand at 5192.591 kb on + strand at 5192.591 kb on + strand at 5192.591 kb on + strand at 5192.595 kb on + strand at 5192.595 kb on + strand at 5192.595 kb on + strand at 5192.646 kb on + strand at 5192.662 kb on + strand at 5192.670 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 5,191,190 + -2.0 5,191,191 - -0.8 5,191,239 - +0.2 5,191,239 - -0.8 5,191,239 - -0.8 5,191,244 + -0.8 5,191,244 + -2.3 5,191,244 + -2.2 5,191,244 + +0.2 5,191,244 + +0.2 5,191,244 + -1.9 5,191,244 + +1.2 5,191,244 + +0.2 5,191,245 - +0.2 5,191,245 - +1.2 5,191,572 - Pf6N2E2_4459 0.41 +2.7 5,191,822 + Pf6N2E2_4459 0.76 +1.2 5,191,936 + -2.5 5,191,936 + +0.2 5,191,936 + -0.8 5,191,936 + -1.8 5,191,936 + -0.4 5,191,936 + -1.2 5,191,936 + +0.2 5,191,936 + +0.2 5,191,936 + -1.4 5,191,936 + +1.2 5,191,936 + -0.8 5,191,936 + +0.2 5,191,936 + +1.2 5,191,936 + +0.2 5,191,936 + -1.2 5,191,936 + -1.4 5,191,936 + +0.2 5,191,936 + -1.4 5,191,936 + -0.4 5,191,936 + -0.4 5,191,936 + +1.2 5,191,936 + +0.2 5,191,936 + +1.2 5,191,937 - -1.6 5,191,937 - -1.3 5,191,937 - +1.2 5,191,937 - -1.5 5,191,937 - +1.2 5,191,937 - +1.2 5,191,937 - +0.2 5,191,937 - +0.2 5,191,937 - -1.6 5,191,937 - -1.4 5,191,937 - +0.2 5,191,937 - -0.8 5,191,937 - -0.6 5,191,937 - -0.6 5,191,937 - -1.4 5,191,937 - -2.4 5,191,937 - +1.2 5,191,940 + -4.0 5,191,940 + +1.2 5,191,999 + +0.2 5,191,999 + -2.0 5,191,999 + -0.4 5,192,000 - +0.2 5,192,000 - +0.4 5,192,000 - -1.2 5,192,000 - +0.2 5,192,000 - -0.4 5,192,009 + +1.2 5,192,009 + -0.4 5,192,009 + -0.4 5,192,009 + +1.2 5,192,009 + -0.8 5,192,009 + -0.4 5,192,010 - +1.2 5,192,023 + +1.2 5,192,440 + +1.2 5,192,440 + -0.8 5,192,440 + +1.2 5,192,440 + +1.2 5,192,440 + -0.4 5,192,440 + -1.6 5,192,440 + +0.2 5,192,440 + +1.2 5,192,441 - +1.2 5,192,441 - -1.4 5,192,441 - +1.2 5,192,441 - -0.4 5,192,441 - +1.2 5,192,524 + +1.2 5,192,591 + +1.2 5,192,591 + +0.2 5,192,591 + -1.8 5,192,591 + +0.2 5,192,591 + +0.2 5,192,595 + +1.2 5,192,595 + -0.4 5,192,595 + -2.2 5,192,646 + -0.8 5,192,662 + -1.3 5,192,670 + -0.4
Or see this region's nucleotide sequence