Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_424 and Pf6N2E2_425 are separated by 217 nucleotides Pf6N2E2_425 and Pf6N2E2_426 are separated by 4 nucleotides Pf6N2E2_426 and Pf6N2E2_427 are separated by 161 nucleotides Pf6N2E2_427 and Pf6N2E2_428 are separated by 125 nucleotides
Pf6N2E2_424 - Decarboxylase family protein, at 492,718 to 494,091
_424
Pf6N2E2_425 - FIG00957304: hypothetical protein, at 494,309 to 494,842
_425
Pf6N2E2_426 - Arsenate reductase (EC 1.20.4.1), at 494,847 to 495,302
_426
Pf6N2E2_427 - Conidiation-specific protein 10, at 495,464 to 495,643
_427
Pf6N2E2_428 - Protease subunit of ATP-dependent Clp proteases, at 495,769 to 496,332
_428
Position (kb) 494
495
496 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 493.901 kb on + strand, within Pf6N2E2_424 at 493.902 kb on - strand, within Pf6N2E2_424 at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.982 kb on + strand at 493.983 kb on - strand at 493.983 kb on - strand at 493.986 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.074 kb on + strand at 494.075 kb on - strand at 494.075 kb on - strand at 494.075 kb on - strand at 494.241 kb on + strand at 494.241 kb on + strand at 494.241 kb on + strand at 494.242 kb on - strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.245 kb on + strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.246 kb on - strand at 494.289 kb on + strand at 494.289 kb on + strand at 494.290 kb on - strand at 494.290 kb on - strand at 494.290 kb on - strand at 494.342 kb on + strand at 494.343 kb on - strand at 494.343 kb on - strand at 494.343 kb on - strand at 494.519 kb on + strand, within Pf6N2E2_425 at 494.520 kb on - strand, within Pf6N2E2_425 at 494.555 kb on + strand, within Pf6N2E2_425 at 494.664 kb on - strand, within Pf6N2E2_425 at 494.664 kb on - strand, within Pf6N2E2_425 at 494.828 kb on + strand at 495.046 kb on + strand, within Pf6N2E2_426 at 495.047 kb on - strand, within Pf6N2E2_426 at 495.047 kb on - strand, within Pf6N2E2_426 at 495.047 kb on - strand, within Pf6N2E2_426 at 495.147 kb on + strand, within Pf6N2E2_426 at 495.147 kb on + strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.148 kb on - strand, within Pf6N2E2_426 at 495.358 kb on + strand at 495.358 kb on + strand at 495.359 kb on - strand at 495.359 kb on - strand at 495.359 kb on - strand at 495.360 kb on + strand at 495.377 kb on - strand at 495.378 kb on + strand at 495.689 kb on - strand at 495.689 kb on - strand at 495.770 kb on + strand at 495.771 kb on - strand at 495.771 kb on - strand at 495.818 kb on - strand at 495.906 kb on + strand, within Pf6N2E2_428 at 495.944 kb on + strand, within Pf6N2E2_428 at 495.944 kb on + strand, within Pf6N2E2_428 at 495.944 kb on + strand, within Pf6N2E2_428 at 495.990 kb on - strand, within Pf6N2E2_428 at 495.990 kb on - strand, within Pf6N2E2_428 at 496.031 kb on + strand, within Pf6N2E2_428 at 496.032 kb on - strand, within Pf6N2E2_428 at 496.097 kb on + strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.098 kb on - strand, within Pf6N2E2_428 at 496.144 kb on + strand, within Pf6N2E2_428 at 496.145 kb on - strand, within Pf6N2E2_428 at 496.145 kb on - strand, within Pf6N2E2_428 at 496.175 kb on + strand, within Pf6N2E2_428 at 496.175 kb on + strand, within Pf6N2E2_428 at 496.266 kb on + strand, within Pf6N2E2_428
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 493,901 + Pf6N2E2_424 0.86 +0.9 493,902 - Pf6N2E2_424 0.86 +0.9 493,982 + +0.9 493,982 + -0.1 493,982 + +0.9 493,982 + +0.9 493,982 + -1.3 493,982 + -0.1 493,982 + -0.8 493,982 + +0.9 493,982 + +0.9 493,983 - +0.9 493,983 - +0.9 493,986 + +0.9 494,074 + -0.1 494,074 + +0.9 494,074 + +0.9 494,074 + +0.9 494,074 + -0.7 494,074 + +0.9 494,075 - -0.1 494,075 - +0.9 494,075 - +0.9 494,241 + +0.9 494,241 + -1.1 494,241 + +0.9 494,242 - -0.7 494,245 + +0.9 494,245 + -1.7 494,245 + +0.9 494,245 + +0.9 494,245 + -0.7 494,245 + -2.3 494,246 - -1.2 494,246 - -3.3 494,246 - -0.1 494,246 - +0.9 494,246 - +0.9 494,289 + +0.9 494,289 + +0.9 494,290 - +0.9 494,290 - -2.2 494,290 - -0.1 494,342 + +0.9 494,343 - +0.9 494,343 - +0.9 494,343 - -1.9 494,519 + Pf6N2E2_425 0.39 -0.1 494,520 - Pf6N2E2_425 0.40 -0.7 494,555 + Pf6N2E2_425 0.46 +0.9 494,664 - Pf6N2E2_425 0.66 +0.9 494,664 - Pf6N2E2_425 0.66 -1.0 494,828 + +0.9 495,046 + Pf6N2E2_426 0.44 -0.1 495,047 - Pf6N2E2_426 0.44 -4.0 495,047 - Pf6N2E2_426 0.44 +0.9 495,047 - Pf6N2E2_426 0.44 -1.4 495,147 + Pf6N2E2_426 0.66 -2.3 495,147 + Pf6N2E2_426 0.66 +0.9 495,148 - Pf6N2E2_426 0.66 +0.9 495,148 - Pf6N2E2_426 0.66 +0.9 495,148 - Pf6N2E2_426 0.66 -0.7 495,148 - Pf6N2E2_426 0.66 -0.7 495,358 + +0.9 495,358 + +0.9 495,359 - +0.9 495,359 - -0.1 495,359 - -1.1 495,360 + -1.0 495,377 - -0.1 495,378 + -1.7 495,689 - -1.8 495,689 - -1.7 495,770 + -0.7 495,771 - -1.4 495,771 - -1.3 495,818 - -0.1 495,906 + Pf6N2E2_428 0.24 +0.9 495,944 + Pf6N2E2_428 0.31 +0.9 495,944 + Pf6N2E2_428 0.31 -1.5 495,944 + Pf6N2E2_428 0.31 -1.6 495,990 - Pf6N2E2_428 0.39 +0.9 495,990 - Pf6N2E2_428 0.39 +0.9 496,031 + Pf6N2E2_428 0.46 +0.9 496,032 - Pf6N2E2_428 0.47 -0.1 496,097 + Pf6N2E2_428 0.58 +0.9 496,098 - Pf6N2E2_428 0.58 -0.1 496,098 - Pf6N2E2_428 0.58 -0.1 496,098 - Pf6N2E2_428 0.58 -0.1 496,098 - Pf6N2E2_428 0.58 +0.9 496,098 - Pf6N2E2_428 0.58 -2.2 496,098 - Pf6N2E2_428 0.58 -1.1 496,144 + Pf6N2E2_428 0.66 +0.9 496,145 - Pf6N2E2_428 0.67 -2.9 496,145 - Pf6N2E2_428 0.67 -0.1 496,175 + Pf6N2E2_428 0.72 +0.9 496,175 + Pf6N2E2_428 0.72 +0.9 496,266 + Pf6N2E2_428 0.88 +0.9
Or see this region's nucleotide sequence