Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2614

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
3,071,605	+				-2.0
3,071,605	+				-0.0
3,071,606	-				+1.0
3,071,606	-				-1.6
3,071,609	-				-0.0
3,071,609	-				-2.2
3,071,609	-				-0.0
3,071,619	-				-0.0
3,071,619	-				+1.0
3,071,702	+				-0.0
3,071,702	+				-1.0
3,071,702	+				-0.0
3,071,703	-				-1.1
3,071,717	+				-0.0
3,071,717	+				+1.0
3,071,718	-				-0.0
3,071,724	+				+1.0
3,071,725	-				-0.6
3,071,725	-				-0.0
3,071,866	+		Pf6N2E2_2613	0.13	+1.0
3,071,866	+		Pf6N2E2_2613	0.13	+1.0
3,071,867	-		Pf6N2E2_2613	0.13	-0.0
3,071,968	+		Pf6N2E2_2613	0.27	-0.6
3,071,968	+		Pf6N2E2_2613	0.27	-1.5
3,071,969	-		Pf6N2E2_2613	0.27	-2.7
3,071,969	-		Pf6N2E2_2613	0.27	-1.4
3,071,969	-		Pf6N2E2_2613	0.27	-0.0
3,071,995	+		Pf6N2E2_2613	0.31	+1.0
3,072,238	+		Pf6N2E2_2613	0.64	-1.6
3,072,241	+		Pf6N2E2_2613	0.64	+1.0
3,072,241	+		Pf6N2E2_2613	0.64	-1.7
3,072,241	+		Pf6N2E2_2613	0.64	+1.0
3,072,241	+		Pf6N2E2_2613	0.64	-0.0
3,072,242	-		Pf6N2E2_2613	0.64	-0.0
3,072,242	-		Pf6N2E2_2613	0.64	+1.0
3,072,242	-		Pf6N2E2_2613	0.64	+1.0
3,072,242	-		Pf6N2E2_2613	0.64	+1.0
3,072,373	+		Pf6N2E2_2613	0.82	-2.6
3,072,374	-		Pf6N2E2_2613	0.82	-0.6
3,072,379	+		Pf6N2E2_2613	0.83	+1.0
3,072,379	+		Pf6N2E2_2613	0.83	+1.0
3,072,379	+		Pf6N2E2_2613	0.83	-0.2
3,072,379	+		Pf6N2E2_2613	0.83	+1.0
3,072,379	+		Pf6N2E2_2613	0.83	-1.6
3,072,379	+		Pf6N2E2_2613	0.83	-1.3
3,072,379	+		Pf6N2E2_2613	0.83	-2.2
3,072,379	+		Pf6N2E2_2613	0.83	+1.0
3,072,379	+		Pf6N2E2_2613	0.83	+1.0
3,072,380	-		Pf6N2E2_2613	0.83	+1.0
3,072,380	-		Pf6N2E2_2613	0.83	+1.0
3,072,380	-		Pf6N2E2_2613	0.83	+1.0
3,072,380	-		Pf6N2E2_2613	0.83	-0.6
3,072,380	-		Pf6N2E2_2613	0.83	-2.1
3,072,380	-		Pf6N2E2_2613	0.83	+1.0
3,072,380	-		Pf6N2E2_2613	0.83	-0.6
3,072,380	-		Pf6N2E2_2613	0.83	-1.8
3,072,380	-		Pf6N2E2_2613	0.83	+1.0
3,072,383	+		Pf6N2E2_2613	0.83	+1.0
3,072,383	+		Pf6N2E2_2613	0.83	-0.6
3,072,383	+		Pf6N2E2_2613	0.83	+1.0
3,072,384	-		Pf6N2E2_2613	0.83	-1.6
3,072,384	-		Pf6N2E2_2613	0.83	+1.0
3,072,485	+				-2.2
3,072,485	+				+1.0
3,072,559	+				+1.0
3,072,560	-				+1.0
3,072,610	-				+1.0
3,072,610	-				-1.7
3,072,615	+				-0.6
3,072,615	+				+1.0
3,072,615	+				-0.0
3,072,757	-		Pf6N2E2_2614	0.22	+1.0
3,072,757	-		Pf6N2E2_2614	0.22	+1.0
3,072,757	-		Pf6N2E2_2614	0.22	-0.0
3,072,763	+		Pf6N2E2_2614	0.23	+1.0
3,072,764	-		Pf6N2E2_2614	0.23	-0.0
3,072,931	+		Pf6N2E2_2614	0.38	-0.0
3,072,931	+		Pf6N2E2_2614	0.38	+1.0
3,072,931	+		Pf6N2E2_2614	0.38	-0.9
3,072,931	+		Pf6N2E2_2614	0.38	+1.0
3,072,932	-		Pf6N2E2_2614	0.38	+1.0
3,072,932	-		Pf6N2E2_2614	0.38	-0.0
3,072,932	-		Pf6N2E2_2614	0.38	-1.0
3,072,932	-		Pf6N2E2_2614	0.38	+1.0
3,072,938	-		Pf6N2E2_2614	0.39	+1.0
3,072,970	-		Pf6N2E2_2614	0.42	+1.0
3,073,009	+		Pf6N2E2_2614	0.45	+1.0
3,073,009	+		Pf6N2E2_2614	0.45	-0.0
3,073,024	+		Pf6N2E2_2614	0.47	-0.6
3,073,024	+		Pf6N2E2_2614	0.47	-0.0
3,073,085	-		Pf6N2E2_2614	0.53	+1.0
3,073,146	-		Pf6N2E2_2614	0.58	-0.9
3,073,240	+		Pf6N2E2_2614	0.67	-1.8
3,073,240	+		Pf6N2E2_2614	0.67	-0.6
3,073,267	+		Pf6N2E2_2614	0.70	-0.0
3,073,298	-		Pf6N2E2_2614	0.72	-0.6
3,073,415	-		Pf6N2E2_2614	0.83	+1.0
3,073,426	+		Pf6N2E2_2614	0.84	-0.6
3,073,426	+		Pf6N2E2_2614	0.84	-1.7
3,073,427	-		Pf6N2E2_2614	0.85	+1.0
3,073,427	-		Pf6N2E2_2614	0.85	-0.0
3,073,427	-		Pf6N2E2_2614	0.85	-1.8
3,073,427	-		Pf6N2E2_2614	0.85	+1.0
3,073,542	-				-2.2
3,073,745	-		Pf6N2E2_2615	0.19	-0.1
3,073,745	-		Pf6N2E2_2615	0.19	+0.9
3,073,805	+		Pf6N2E2_2615	0.26	+0.9
3,073,805	+		Pf6N2E2_2615	0.26	+0.9
3,073,806	-		Pf6N2E2_2615	0.26	-0.5
3,073,806	-		Pf6N2E2_2615	0.26	+0.9
3,073,832	+		Pf6N2E2_2615	0.29	-2.1
3,073,943	+		Pf6N2E2_2615	0.42	-1.8
3,073,943	+		Pf6N2E2_2615	0.42	+0.9
3,073,944	-		Pf6N2E2_2615	0.42	-2.6
3,074,013	+		Pf6N2E2_2615	0.50	-2.2
3,074,173	-		Pf6N2E2_2615	0.69	+0.9
3,074,173	-		Pf6N2E2_2615	0.69	-3.4
3,074,173	-		Pf6N2E2_2615	0.69	-0.1
3,074,173	-		Pf6N2E2_2615	0.69	+0.9
3,074,199	-		Pf6N2E2_2615	0.72	-0.6
3,074,358	+				+0.9
3,074,428	+				+0.9
3,074,429	-				-1.9
3,074,439	+				+0.9
3,074,439	+				+0.9
3,074,548	+				-2.2
3,074,548	+				+0.9
3,074,548	+				+0.9
3,074,549	-				-1.4
3,074,549	-				-0.6
3,074,549	-				+0.9
3,074,563	-		Pf6N2E2_2616	0.10	+0.9
3,074,570	+		Pf6N2E2_2616	0.11	+0.9
3,074,588	+		Pf6N2E2_2616	0.12	+0.9
3,074,588	+		Pf6N2E2_2616	0.12	+0.9
3,074,588	+		Pf6N2E2_2616	0.12	-0.6
3,074,588	+		Pf6N2E2_2616	0.12	-0.6
3,074,589	-		Pf6N2E2_2616	0.12	+0.9
3,074,589	-		Pf6N2E2_2616	0.12	+0.9
3,074,589	-		Pf6N2E2_2616	0.12	+0.9
3,074,589	-		Pf6N2E2_2616	0.12	+0.9
3,074,589	-		Pf6N2E2_2616	0.12	+0.9