Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2439

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,887,061	-		Pf6N2E2_2437	0.76	-0.1
2,887,061	-		Pf6N2E2_2437	0.76	-0.1
2,887,275	-		Pf6N2E2_2437	0.82	-0.1
2,887,290	-		Pf6N2E2_2437	0.82	+0.9
2,887,602	+				-0.9
2,887,602	+				+0.9
2,887,602	+				+0.9
2,887,603	-				+0.9
2,887,603	-				+0.9
2,887,603	-				+0.9
2,887,603	-				-0.1
2,887,744	-				-2.1
2,887,755	+				+0.9
2,887,755	+				-2.1
2,887,755	+				-1.9
2,887,756	-				+0.9
2,887,756	-				-1.6
2,887,756	-				+0.9
2,887,943	+				+0.9
2,887,946	+				+0.9
2,887,946	+				-2.0
2,887,947	-				-1.6
2,887,947	-				+0.9
2,887,947	-				-0.1
2,887,947	-				-1.7
2,887,947	-				-1.4
2,887,947	-				-1.2
2,887,947	-				-1.5
2,887,947	-				-0.1
2,887,947	-				-0.1
2,887,951	+				-1.8
2,887,951	+				+0.9
2,887,952	-				-1.1
2,887,952	-				-2.1
2,887,952	-				+0.9
2,887,952	-				-1.5
2,887,969	+		Pf6N2E2_2438	0.16	+0.9
2,887,969	+		Pf6N2E2_2438	0.16	+0.9
2,888,112	+				-0.1
2,888,113	-				-0.7
2,888,211	+				-0.7
2,888,240	-				-1.1
2,888,240	-				-0.1
2,888,240	-				-0.1
2,888,248	+				-0.1
2,888,248	+				-2.0
2,888,248	+				+0.9
2,888,248	+				-1.7
2,888,249	-				-1.5
2,888,249	-				-0.8
2,888,249	-				-0.1
2,888,249	-				-0.7
2,888,383	+		Pf6N2E2_2439	0.11	-2.0
2,888,384	-		Pf6N2E2_2439	0.11	-1.1
2,888,384	-		Pf6N2E2_2439	0.11	-0.1
2,888,476	+		Pf6N2E2_2439	0.15	+0.9
2,888,477	-		Pf6N2E2_2439	0.15	-0.1
2,888,590	+		Pf6N2E2_2439	0.18	-0.1
2,888,590	+		Pf6N2E2_2439	0.18	+0.9
2,888,591	-		Pf6N2E2_2439	0.18	-1.9
2,888,591	-		Pf6N2E2_2439	0.18	+0.9
2,888,591	-		Pf6N2E2_2439	0.18	+0.9
2,888,591	-		Pf6N2E2_2439	0.18	-0.1
2,889,208	+		Pf6N2E2_2439	0.39	+0.9
2,889,209	-		Pf6N2E2_2439	0.39	-0.1
2,889,400	+		Pf6N2E2_2439	0.46	-0.1
2,889,400	+		Pf6N2E2_2439	0.46	-1.4
2,889,400	+		Pf6N2E2_2439	0.46	-0.7
2,889,400	+		Pf6N2E2_2439	0.46	-0.1
2,889,400	+		Pf6N2E2_2439	0.46	-1.7
2,889,401	-		Pf6N2E2_2439	0.46	-2.0
2,889,401	-		Pf6N2E2_2439	0.46	-0.1
2,889,401	-		Pf6N2E2_2439	0.46	-0.1
2,889,485	+		Pf6N2E2_2439	0.49	-1.9
2,889,874	+		Pf6N2E2_2439	0.62	+0.9
2,889,875	-		Pf6N2E2_2439	0.62	-0.1
2,889,965	-		Pf6N2E2_2439	0.65	-1.8
2,890,045	+		Pf6N2E2_2439	0.68	-1.7
2,890,045	+		Pf6N2E2_2439	0.68	+0.9
2,890,045	+		Pf6N2E2_2439	0.68	-1.1
2,890,045	+		Pf6N2E2_2439	0.68	-1.8
2,890,046	-		Pf6N2E2_2439	0.68	-1.4
2,890,046	-		Pf6N2E2_2439	0.68	-2.5
2,890,046	-		Pf6N2E2_2439	0.68	-1.4
2,890,046	-		Pf6N2E2_2439	0.68	-0.9
2,890,046	-		Pf6N2E2_2439	0.68	+0.9
2,890,046	-		Pf6N2E2_2439	0.68	-1.8
2,890,046	-		Pf6N2E2_2439	0.68	+0.9
2,890,100	+		Pf6N2E2_2439	0.70	-0.1
2,890,100	+		Pf6N2E2_2439	0.70	-0.1
2,890,101	-		Pf6N2E2_2439	0.70	+0.9
2,890,144	+		Pf6N2E2_2439	0.71	-0.1
2,890,395	-		Pf6N2E2_2439	0.80	-1.3
2,890,514	-		Pf6N2E2_2439	0.84	-0.1
2,890,514	-		Pf6N2E2_2439	0.84	+0.9
2,890,531	+		Pf6N2E2_2439	0.84	+0.9
2,890,531	+		Pf6N2E2_2439	0.84	-3.8
2,890,532	-		Pf6N2E2_2439	0.84	-2.0
2,890,532	-		Pf6N2E2_2439	0.84	-1.9
2,890,532	-		Pf6N2E2_2439	0.84	-2.5
2,890,576	+		Pf6N2E2_2439	0.86	+0.9
2,890,576	+		Pf6N2E2_2439	0.86	-0.9
2,890,577	-		Pf6N2E2_2439	0.86	-2.3
2,890,577	-		Pf6N2E2_2439	0.86	+0.9
2,890,700	-		Pf6N2E2_2439	0.90	-0.7
2,890,796	-				-0.4
2,890,796	-				-2.8
2,890,796	-				-1.6
2,890,903	+				+0.9
2,890,903	+				+0.9
2,890,903	+				+0.9
2,890,904	-				-1.2
2,890,913	-				+0.9
2,890,991	+				-0.1
2,891,062	-		Pf6N2E2_2440	0.14	-2.5
2,891,528	-				+0.9
2,891,528	-				+0.9
2,891,580	+		Pf6N2E2_2441	0.12	+0.9
2,891,580	+		Pf6N2E2_2441	0.12	+0.9
2,891,580	+		Pf6N2E2_2441	0.12	-2.3
2,891,581	-		Pf6N2E2_2441	0.12	-0.1
2,891,675	+		Pf6N2E2_2441	0.22	+0.9
2,891,830	+		Pf6N2E2_2441	0.40	-2.4
2,891,830	+		Pf6N2E2_2441	0.40	-0.1
2,891,830	+		Pf6N2E2_2441	0.40	+0.9
2,891,830	+		Pf6N2E2_2441	0.40	+0.9
2,891,830	+		Pf6N2E2_2441	0.40	-1.4
2,891,830	+		Pf6N2E2_2441	0.40	+0.9
2,891,830	+		Pf6N2E2_2441	0.40	-0.7
2,891,830	+		Pf6N2E2_2441	0.40	+0.9
2,891,831	-		Pf6N2E2_2441	0.40	+0.9