Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_14 and Pf6N2E2_15 are separated by 201 nucleotides Pf6N2E2_15 and Pf6N2E2_16 are separated by 202 nucleotides
Pf6N2E2_14 - Putative dipeptidase, pyoverdin biosynthesis PvdM, at 43,210 to 44,580
_14
Pf6N2E2_15 - Pyoverdine biosynthesis related protein PvdP, at 44,782 to 46,380
_15
Pf6N2E2_16 - hypothetical protein, at 46,583 to 46,909
_16
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 43.803 kb on + strand, within Pf6N2E2_14 at 43.991 kb on + strand, within Pf6N2E2_14 at 43.992 kb on - strand, within Pf6N2E2_14 at 43.992 kb on - strand, within Pf6N2E2_14 at 43.992 kb on - strand, within Pf6N2E2_14 at 44.135 kb on + strand, within Pf6N2E2_14 at 44.135 kb on + strand, within Pf6N2E2_14 at 44.235 kb on + strand, within Pf6N2E2_14 at 44.236 kb on - strand, within Pf6N2E2_14 at 44.633 kb on - strand at 44.686 kb on + strand at 44.688 kb on + strand at 44.689 kb on - strand at 44.714 kb on + strand at 44.751 kb on + strand at 44.751 kb on + strand at 44.751 kb on + strand at 44.824 kb on + strand at 44.824 kb on + strand at 44.824 kb on + strand at 44.827 kb on + strand at 44.828 kb on - strand at 45.044 kb on - strand, within Pf6N2E2_15 at 45.179 kb on - strand, within Pf6N2E2_15 at 45.179 kb on - strand, within Pf6N2E2_15 at 45.342 kb on + strand, within Pf6N2E2_15 at 45.342 kb on + strand, within Pf6N2E2_15 at 45.736 kb on + strand, within Pf6N2E2_15 at 45.775 kb on + strand, within Pf6N2E2_15 at 45.776 kb on - strand, within Pf6N2E2_15 at 45.776 kb on - strand, within Pf6N2E2_15 at 45.979 kb on + strand, within Pf6N2E2_15 at 46.139 kb on + strand, within Pf6N2E2_15 at 46.140 kb on - strand, within Pf6N2E2_15 at 46.285 kb on - strand at 46.348 kb on + strand at 46.401 kb on - strand at 46.831 kb on - strand, within Pf6N2E2_16 at 46.914 kb on + strand at 46.921 kb on + strand at 46.921 kb on + strand at 46.921 kb on + strand at 46.922 kb on - strand at 46.922 kb on - strand at 46.922 kb on - strand at 46.922 kb on - strand at 46.922 kb on - strand at 46.924 kb on + strand at 46.924 kb on + strand at 46.924 kb on + strand at 46.927 kb on + strand at 46.927 kb on + strand at 46.928 kb on - strand at 46.928 kb on - strand at 47.001 kb on + strand at 47.002 kb on - strand at 47.070 kb on + strand at 47.070 kb on + strand at 47.070 kb on + strand at 47.070 kb on + strand at 47.094 kb on + strand at 47.094 kb on + strand at 47.094 kb on + strand at 47.145 kb on + strand at 47.146 kb on - strand at 47.193 kb on + strand at 47.193 kb on + strand at 47.194 kb on - strand at 47.194 kb on - strand at 47.215 kb on + strand at 47.234 kb on + strand at 47.234 kb on + strand at 47.235 kb on - strand at 47.235 kb on - strand at 47.235 kb on - strand at 47.273 kb on - strand at 47.280 kb on + strand at 47.281 kb on - strand at 47.309 kb on - strand at 47.353 kb on - strand at 47.370 kb on + strand at 47.373 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 43,803 + Pf6N2E2_14 0.43 -1.9 43,991 + Pf6N2E2_14 0.57 -0.0 43,992 - Pf6N2E2_14 0.57 -0.0 43,992 - Pf6N2E2_14 0.57 +1.0 43,992 - Pf6N2E2_14 0.57 -0.8 44,135 + Pf6N2E2_14 0.67 -0.0 44,135 + Pf6N2E2_14 0.67 -2.2 44,235 + Pf6N2E2_14 0.75 +1.0 44,236 - Pf6N2E2_14 0.75 +1.0 44,633 - -0.6 44,686 + -1.7 44,688 + +1.0 44,689 - -0.0 44,714 + -2.3 44,751 + +1.0 44,751 + +1.0 44,751 + -3.6 44,824 + -0.0 44,824 + -1.0 44,824 + -1.4 44,827 + -0.0 44,828 - -0.0 45,044 - Pf6N2E2_15 0.16 +1.0 45,179 - Pf6N2E2_15 0.25 +1.0 45,179 - Pf6N2E2_15 0.25 -0.4 45,342 + Pf6N2E2_15 0.35 -1.3 45,342 + Pf6N2E2_15 0.35 +1.0 45,736 + Pf6N2E2_15 0.60 -0.0 45,775 + Pf6N2E2_15 0.62 -1.0 45,776 - Pf6N2E2_15 0.62 -1.0 45,776 - Pf6N2E2_15 0.62 +1.0 45,979 + Pf6N2E2_15 0.75 -0.0 46,139 + Pf6N2E2_15 0.85 -0.8 46,140 - Pf6N2E2_15 0.85 +0.4 46,285 - -1.8 46,348 + -0.6 46,401 - -2.3 46,831 - Pf6N2E2_16 0.76 -0.6 46,914 + -0.6 46,921 + +1.0 46,921 + -0.0 46,921 + +1.0 46,922 - -0.0 46,922 - -0.6 46,922 - +1.0 46,922 - -0.0 46,922 - +1.0 46,924 + -1.3 46,924 + -0.0 46,924 + -0.0 46,927 + -0.0 46,927 + -0.0 46,928 - +1.0 46,928 - +1.0 47,001 + +0.4 47,002 - +1.0 47,070 + +1.0 47,070 + -2.6 47,070 + +0.4 47,070 + -0.0 47,094 + +1.0 47,094 + -0.0 47,094 + -1.0 47,145 + +1.0 47,146 - -3.3 47,193 + -2.3 47,193 + -0.0 47,194 - +1.0 47,194 - +1.0 47,215 + -1.6 47,234 + +1.0 47,234 + -0.4 47,235 - +1.0 47,235 - -2.1 47,235 - +1.0 47,273 - -1.6 47,280 + -1.3 47,281 - -0.6 47,309 - -0.0 47,353 - -0.9 47,370 + -2.0 47,373 + -2.4
Or see this region's nucleotide sequence