Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1454

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1453 and Pf6N2E2_1454 are separated by 155 nucleotidesPf6N2E2_1454 and Pf6N2E2_1455 are separated by 147 nucleotides Pf6N2E2_1453 - Xylose activator XylR (AraC family), at 1,700,452 to 1,701,639 _1453 Pf6N2E2_1454 - Xylose isomerase (EC 5.3.1.5), at 1,701,795 to 1,703,111 _1454 Pf6N2E2_1455 - Xylose ABC transporter, periplasmic xylose-binding protein XylF, at 1,703,259 to 1,704,260 _1455 Position (kb) 1701 1702 1703 1704Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1701.299 kb on + strand, within Pf6N2E2_1453at 1701.299 kb on + strand, within Pf6N2E2_1453at 1701.549 kb on - strandat 1701.645 kb on + strandat 1701.671 kb on - strandat 1701.695 kb on + strandat 1701.755 kb on - strandat 1701.777 kb on + strandat 1701.777 kb on + strandat 1701.778 kb on - strandat 1701.801 kb on + strandat 1701.802 kb on - strandat 1701.802 kb on - strandat 1701.802 kb on - strandat 1701.870 kb on + strandat 1701.870 kb on + strandat 1701.934 kb on - strand, within Pf6N2E2_1454at 1701.941 kb on + strand, within Pf6N2E2_1454at 1701.942 kb on - strand, within Pf6N2E2_1454at 1701.942 kb on - strand, within Pf6N2E2_1454at 1702.083 kb on + strand, within Pf6N2E2_1454at 1702.344 kb on + strand, within Pf6N2E2_1454at 1702.344 kb on + strand, within Pf6N2E2_1454at 1702.344 kb on + strand, within Pf6N2E2_1454at 1702.524 kb on + strand, within Pf6N2E2_1454at 1702.525 kb on - strand, within Pf6N2E2_1454at 1702.622 kb on + strand, within Pf6N2E2_1454at 1702.623 kb on - strand, within Pf6N2E2_1454at 1702.758 kb on + strand, within Pf6N2E2_1454at 1702.759 kb on - strand, within Pf6N2E2_1454at 1703.099 kb on + strandat 1703.099 kb on + strandat 1703.100 kb on - strandat 1703.100 kb on - strandat 1703.103 kb on + strandat 1703.103 kb on + strandat 1703.103 kb on + strandat 1703.104 kb on - strandat 1703.144 kb on + strandat 1703.145 kb on - strandat 1703.145 kb on - strandat 1703.145 kb on - strandat 1703.145 kb on - strandat 1703.189 kb on + strandat 1703.198 kb on - strandat 1703.198 kb on - strandat 1703.242 kb on + strandat 1703.243 kb on - strandat 1703.243 kb on - strandat 1703.397 kb on + strand, within Pf6N2E2_1455at 1703.397 kb on + strand, within Pf6N2E2_1455at 1703.398 kb on - strand, within Pf6N2E2_1455at 1703.398 kb on - strand, within Pf6N2E2_1455at 1703.398 kb on - strand, within Pf6N2E2_1455at 1703.595 kb on + strand, within Pf6N2E2_1455at 1703.596 kb on - strand, within Pf6N2E2_1455at 1703.631 kb on + strand, within Pf6N2E2_1455at 1703.631 kb on + strand, within Pf6N2E2_1455at 1703.632 kb on - strand, within Pf6N2E2_1455at 1703.706 kb on + strand, within Pf6N2E2_1455at 1703.706 kb on + strand, within Pf6N2E2_1455at 1704.052 kb on - strand, within Pf6N2E2_1455

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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1,701,299 + Pf6N2E2_1453 0.71 +0.8
1,701,299 + Pf6N2E2_1453 0.71 +0.8
1,701,549 - +1.8
1,701,645 + +0.8
1,701,671 - +0.8
1,701,695 + +0.8
1,701,755 - +0.8
1,701,777 + +0.8
1,701,777 + +0.8
1,701,778 - +0.8
1,701,801 + +0.8
1,701,802 - -0.8
1,701,802 - -2.3
1,701,802 - +0.8
1,701,870 + -0.2
1,701,870 + +0.8
1,701,934 - Pf6N2E2_1454 0.11 -2.8
1,701,941 + Pf6N2E2_1454 0.11 +0.8
1,701,942 - Pf6N2E2_1454 0.11 -2.8
1,701,942 - Pf6N2E2_1454 0.11 -2.2
1,702,083 + Pf6N2E2_1454 0.22 +0.8
1,702,344 + Pf6N2E2_1454 0.42 +0.8
1,702,344 + Pf6N2E2_1454 0.42 -2.2
1,702,344 + Pf6N2E2_1454 0.42 -0.2
1,702,524 + Pf6N2E2_1454 0.55 -0.8
1,702,525 - Pf6N2E2_1454 0.55 -0.2
1,702,622 + Pf6N2E2_1454 0.63 +0.8
1,702,623 - Pf6N2E2_1454 0.63 +0.8
1,702,758 + Pf6N2E2_1454 0.73 +0.8
1,702,759 - Pf6N2E2_1454 0.73 -0.8
1,703,099 + +0.8
1,703,099 + -1.5
1,703,100 - +0.8
1,703,100 - -0.2
1,703,103 + +0.8
1,703,103 + -0.2
1,703,103 + -0.2
1,703,104 - -1.6
1,703,144 + -0.2
1,703,145 - +0.8
1,703,145 - +0.8
1,703,145 - -0.2
1,703,145 - -1.1
1,703,189 + +0.8
1,703,198 - +0.8
1,703,198 - -0.8
1,703,242 + +0.8
1,703,243 - -0.2
1,703,243 - +0.8
1,703,397 + Pf6N2E2_1455 0.14 +0.8
1,703,397 + Pf6N2E2_1455 0.14 +0.8
1,703,398 - Pf6N2E2_1455 0.14 -0.2
1,703,398 - Pf6N2E2_1455 0.14 -1.7
1,703,398 - Pf6N2E2_1455 0.14 -0.2
1,703,595 + Pf6N2E2_1455 0.34 +0.8
1,703,596 - Pf6N2E2_1455 0.34 +0.8
1,703,631 + Pf6N2E2_1455 0.37 -0.2
1,703,631 + Pf6N2E2_1455 0.37 +0.8
1,703,632 - Pf6N2E2_1455 0.37 +0.8
1,703,706 + Pf6N2E2_1455 0.45 -1.6
1,703,706 + Pf6N2E2_1455 0.45 +0.8
1,704,052 - Pf6N2E2_1455 0.79 -1.4

Or see this region's nucleotide sequence