Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_140 and Pf6N2E2_141 are separated by 903 nucleotides Pf6N2E2_141 and Pf6N2E2_142 are separated by 192 nucleotides
Pf6N2E2_140 - Glutamate carboxypeptidase (EC 3.4.17.11), at 190,063 to 191,301
_140
Pf6N2E2_141 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 192,205 to 193,539
_141
Pf6N2E2_142 - Exodeoxyribonuclease III (EC 3.1.11.2), at 193,732 to 194,544
_142
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 191.227 kb on + strand at 191.227 kb on + strand at 191.228 kb on - strand at 191.260 kb on + strand at 191.307 kb on + strand at 191.307 kb on + strand at 191.308 kb on - strand at 191.458 kb on - strand at 191.464 kb on - strand at 191.468 kb on - strand at 191.468 kb on - strand at 191.468 kb on - strand at 191.817 kb on + strand at 191.817 kb on + strand at 191.818 kb on - strand at 191.818 kb on - strand at 191.818 kb on - strand at 191.958 kb on - strand at 191.958 kb on - strand at 191.958 kb on - strand at 191.964 kb on - strand at 192.317 kb on + strand at 192.449 kb on + strand, within Pf6N2E2_141 at 192.449 kb on + strand, within Pf6N2E2_141 at 192.450 kb on - strand, within Pf6N2E2_141 at 192.450 kb on - strand, within Pf6N2E2_141 at 192.450 kb on - strand, within Pf6N2E2_141 at 192.714 kb on - strand, within Pf6N2E2_141 at 192.827 kb on + strand, within Pf6N2E2_141 at 192.960 kb on + strand, within Pf6N2E2_141 at 192.960 kb on + strand, within Pf6N2E2_141 at 192.960 kb on + strand, within Pf6N2E2_141 at 192.960 kb on + strand, within Pf6N2E2_141 at 192.960 kb on + strand, within Pf6N2E2_141 at 192.965 kb on + strand, within Pf6N2E2_141 at 192.965 kb on + strand, within Pf6N2E2_141 at 192.965 kb on + strand, within Pf6N2E2_141 at 192.965 kb on + strand, within Pf6N2E2_141 at 192.965 kb on + strand, within Pf6N2E2_141 at 192.965 kb on + strand, within Pf6N2E2_141 at 192.965 kb on + strand, within Pf6N2E2_141 at 192.966 kb on - strand, within Pf6N2E2_141 at 192.966 kb on - strand, within Pf6N2E2_141 at 192.966 kb on - strand, within Pf6N2E2_141 at 192.966 kb on - strand, within Pf6N2E2_141 at 192.992 kb on + strand, within Pf6N2E2_141 at 192.992 kb on + strand, within Pf6N2E2_141 at 193.111 kb on - strand, within Pf6N2E2_141 at 193.428 kb on + strand at 193.448 kb on - strand at 193.577 kb on + strand at 193.577 kb on + strand at 193.620 kb on + strand at 193.628 kb on + strand at 193.628 kb on + strand at 193.629 kb on - strand at 193.629 kb on - strand at 194.216 kb on + strand, within Pf6N2E2_142 at 194.216 kb on + strand, within Pf6N2E2_142 at 194.315 kb on + strand, within Pf6N2E2_142 at 194.315 kb on + strand, within Pf6N2E2_142 at 194.316 kb on - strand, within Pf6N2E2_142 at 194.316 kb on - strand, within Pf6N2E2_142 at 194.316 kb on - strand, within Pf6N2E2_142 at 194.316 kb on - strand, within Pf6N2E2_142 at 194.378 kb on + strand, within Pf6N2E2_142
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 191,227 + -1.0 191,227 + +1.0 191,228 - +1.0 191,260 + -1.8 191,307 + +1.0 191,307 + +1.0 191,308 - -1.6 191,458 - -0.0 191,464 - -2.0 191,468 - +1.0 191,468 - -0.0 191,468 - -1.3 191,817 + +1.0 191,817 + -0.0 191,818 - +1.0 191,818 - +1.0 191,818 - -0.0 191,958 - +1.0 191,958 - +1.0 191,958 - +1.0 191,964 - -0.0 192,317 + -0.0 192,449 + Pf6N2E2_141 0.18 -0.0 192,449 + Pf6N2E2_141 0.18 -0.0 192,450 - Pf6N2E2_141 0.18 -0.0 192,450 - Pf6N2E2_141 0.18 +1.0 192,450 - Pf6N2E2_141 0.18 +1.0 192,714 - Pf6N2E2_141 0.38 -1.0 192,827 + Pf6N2E2_141 0.47 +1.0 192,960 + Pf6N2E2_141 0.57 -0.0 192,960 + Pf6N2E2_141 0.57 -0.0 192,960 + Pf6N2E2_141 0.57 +1.0 192,960 + Pf6N2E2_141 0.57 +1.0 192,960 + Pf6N2E2_141 0.57 -1.9 192,965 + Pf6N2E2_141 0.57 -0.6 192,965 + Pf6N2E2_141 0.57 +1.0 192,965 + Pf6N2E2_141 0.57 -2.2 192,965 + Pf6N2E2_141 0.57 -1.0 192,965 + Pf6N2E2_141 0.57 +1.0 192,965 + Pf6N2E2_141 0.57 -1.8 192,965 + Pf6N2E2_141 0.57 -1.6 192,966 - Pf6N2E2_141 0.57 -1.3 192,966 - Pf6N2E2_141 0.57 +1.0 192,966 - Pf6N2E2_141 0.57 -1.7 192,966 - Pf6N2E2_141 0.57 -0.6 192,992 + Pf6N2E2_141 0.59 -2.9 192,992 + Pf6N2E2_141 0.59 +1.0 193,111 - Pf6N2E2_141 0.68 +1.0 193,428 + -0.0 193,448 - -0.0 193,577 + +1.0 193,577 + -0.6 193,620 + +1.0 193,628 + +1.0 193,628 + +1.0 193,629 - +1.0 193,629 - -1.6 194,216 + Pf6N2E2_142 0.60 +1.0 194,216 + Pf6N2E2_142 0.60 +1.0 194,315 + Pf6N2E2_142 0.72 -1.2 194,315 + Pf6N2E2_142 0.72 -0.6 194,316 - Pf6N2E2_142 0.72 +1.0 194,316 - Pf6N2E2_142 0.72 -0.0 194,316 - Pf6N2E2_142 0.72 -0.0 194,316 - Pf6N2E2_142 0.72 +1.0 194,378 + Pf6N2E2_142 0.79 +1.0
Or see this region's nucleotide sequence