Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_130 and Pf6N2E2_131 are separated by 31 nucleotides Pf6N2E2_131 and Pf6N2E2_132 are separated by 219 nucleotides Pf6N2E2_132 and Pf6N2E2_133 are separated by 42 nucleotides Pf6N2E2_133 and Pf6N2E2_134 are separated by 342 nucleotides
Pf6N2E2_130 - hypothetical protein, at 180,710 to 180,952
_130
Pf6N2E2_131 - hypothetical protein, at 180,984 to 181,157
_131
Pf6N2E2_132 - hcp, at 181,377 to 181,658
_132
Pf6N2E2_133 - hypothetical protein, at 181,701 to 181,850
_133
Pf6N2E2_134 - FIG00960493: hypothetical protein, at 182,193 to 183,569
_134
Position (kb) 181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 180.773 kb on + strand, within Pf6N2E2_130 at 181.179 kb on - strand at 181.186 kb on + strand at 181.205 kb on - strand at 181.221 kb on + strand at 181.221 kb on + strand at 181.221 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.225 kb on - strand at 181.225 kb on - strand at 181.225 kb on - strand at 181.225 kb on - strand at 181.255 kb on + strand at 181.256 kb on - strand at 181.312 kb on - strand at 181.321 kb on + strand at 181.321 kb on + strand at 181.428 kb on + strand, within Pf6N2E2_132 at 181.428 kb on + strand, within Pf6N2E2_132 at 181.429 kb on - strand, within Pf6N2E2_132 at 181.429 kb on - strand, within Pf6N2E2_132 at 181.429 kb on - strand, within Pf6N2E2_132 at 181.519 kb on + strand, within Pf6N2E2_132 at 181.519 kb on + strand, within Pf6N2E2_132 at 181.564 kb on + strand, within Pf6N2E2_132 at 181.565 kb on - strand, within Pf6N2E2_132 at 181.565 kb on - strand, within Pf6N2E2_132 at 181.567 kb on + strand, within Pf6N2E2_132 at 181.567 kb on + strand, within Pf6N2E2_132 at 181.567 kb on + strand, within Pf6N2E2_132 at 181.568 kb on - strand, within Pf6N2E2_132 at 181.568 kb on - strand, within Pf6N2E2_132 at 181.568 kb on - strand, within Pf6N2E2_132 at 181.683 kb on - strand at 181.692 kb on + strand at 181.693 kb on - strand at 181.693 kb on - strand at 181.705 kb on - strand at 181.705 kb on - strand at 181.790 kb on + strand, within Pf6N2E2_133 at 181.811 kb on + strand, within Pf6N2E2_133 at 181.829 kb on + strand, within Pf6N2E2_133 at 181.851 kb on + strand at 181.851 kb on + strand at 181.851 kb on + strand at 181.851 kb on + strand at 181.852 kb on - strand at 181.852 kb on - strand at 181.852 kb on - strand at 181.852 kb on - strand at 181.852 kb on - strand at 181.879 kb on + strand at 181.879 kb on + strand at 181.879 kb on + strand at 181.880 kb on - strand at 182.188 kb on + strand at 182.320 kb on + strand at 182.320 kb on + strand at 182.392 kb on + strand, within Pf6N2E2_134 at 182.392 kb on + strand, within Pf6N2E2_134 at 182.393 kb on - strand, within Pf6N2E2_134 at 182.393 kb on - strand, within Pf6N2E2_134 at 182.416 kb on + strand, within Pf6N2E2_134 at 182.416 kb on + strand, within Pf6N2E2_134 at 182.417 kb on - strand, within Pf6N2E2_134 at 182.506 kb on + strand, within Pf6N2E2_134 at 182.506 kb on + strand, within Pf6N2E2_134 at 182.506 kb on + strand, within Pf6N2E2_134 at 182.506 kb on + strand, within Pf6N2E2_134 at 182.581 kb on + strand, within Pf6N2E2_134 at 182.582 kb on - strand, within Pf6N2E2_134 at 182.582 kb on - strand, within Pf6N2E2_134
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 180,773 + Pf6N2E2_130 0.26 +1.0 181,179 - +1.0 181,186 + +1.0 181,205 - +1.0 181,221 + -0.4 181,221 + -0.0 181,221 + -1.0 181,224 + -0.0 181,224 + -1.7 181,224 + +1.0 181,224 + -0.0 181,224 + -1.6 181,224 + -0.0 181,224 + -2.0 181,224 + -2.5 181,225 - -0.8 181,225 - +1.0 181,225 - -1.6 181,225 - +1.0 181,255 + -0.0 181,256 - -0.0 181,312 - +1.0 181,321 + +1.0 181,321 + +1.0 181,428 + Pf6N2E2_132 0.18 +1.0 181,428 + Pf6N2E2_132 0.18 +1.0 181,429 - Pf6N2E2_132 0.18 -1.4 181,429 - Pf6N2E2_132 0.18 +1.0 181,429 - Pf6N2E2_132 0.18 -1.4 181,519 + Pf6N2E2_132 0.50 +1.0 181,519 + Pf6N2E2_132 0.50 -0.0 181,564 + Pf6N2E2_132 0.66 +1.0 181,565 - Pf6N2E2_132 0.67 -0.6 181,565 - Pf6N2E2_132 0.67 -0.0 181,567 + Pf6N2E2_132 0.67 -0.0 181,567 + Pf6N2E2_132 0.67 -2.5 181,567 + Pf6N2E2_132 0.67 +1.0 181,568 - Pf6N2E2_132 0.68 +1.0 181,568 - Pf6N2E2_132 0.68 -2.9 181,568 - Pf6N2E2_132 0.68 -1.6 181,683 - -0.7 181,692 + -0.6 181,693 - +1.0 181,693 - +1.0 181,705 - +1.0 181,705 - +1.0 181,790 + Pf6N2E2_133 0.59 -0.0 181,811 + Pf6N2E2_133 0.73 +1.0 181,829 + Pf6N2E2_133 0.85 -1.4 181,851 + -2.3 181,851 + +1.0 181,851 + -0.9 181,851 + +1.0 181,852 - -0.6 181,852 - -0.0 181,852 - -1.8 181,852 - -0.0 181,852 - -0.0 181,879 + +1.0 181,879 + -0.0 181,879 + -0.0 181,880 - +1.0 182,188 + +1.0 182,320 + -1.0 182,320 + +1.0 182,392 + Pf6N2E2_134 0.14 +1.0 182,392 + Pf6N2E2_134 0.14 -0.8 182,393 - Pf6N2E2_134 0.15 -1.5 182,393 - Pf6N2E2_134 0.15 +1.0 182,416 + Pf6N2E2_134 0.16 +1.0 182,416 + Pf6N2E2_134 0.16 -1.7 182,417 - Pf6N2E2_134 0.16 -1.8 182,506 + Pf6N2E2_134 0.23 +1.0 182,506 + Pf6N2E2_134 0.23 +1.0 182,506 + Pf6N2E2_134 0.23 -1.0 182,506 + Pf6N2E2_134 0.23 +0.2 182,581 + Pf6N2E2_134 0.28 +1.0 182,582 - Pf6N2E2_134 0.28 -0.0 182,582 - Pf6N2E2_134 0.28 +1.0
Or see this region's nucleotide sequence