Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_841

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_840 and Pf6N2E2_841 are separated by 10 nucleotidesPf6N2E2_841 and Pf6N2E2_842 are separated by 365 nucleotides Pf6N2E2_840 - Alcohol dehydrogenase (EC 1.1.1.1), at 985,335 to 986,321 _840 Pf6N2E2_841 - hypothetical protein, at 986,332 to 986,493 _841 Pf6N2E2_842 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 986,859 to 987,566 _842 Position (kb) 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1at 985.461 kb on + strand, within Pf6N2E2_840at 985.461 kb on + strand, within Pf6N2E2_840at 985.461 kb on + strand, within Pf6N2E2_840at 985.461 kb on + strand, within Pf6N2E2_840at 985.462 kb on - strand, within Pf6N2E2_840at 985.462 kb on - strand, within Pf6N2E2_840at 985.462 kb on - strand, within Pf6N2E2_840at 985.462 kb on - strand, within Pf6N2E2_840at 985.669 kb on + strand, within Pf6N2E2_840at 985.684 kb on + strand, within Pf6N2E2_840at 985.684 kb on + strand, within Pf6N2E2_840at 985.685 kb on - strand, within Pf6N2E2_840at 985.725 kb on + strand, within Pf6N2E2_840at 985.882 kb on + strand, within Pf6N2E2_840at 985.882 kb on + strand, within Pf6N2E2_840at 985.882 kb on + strand, within Pf6N2E2_840at 985.883 kb on - strand, within Pf6N2E2_840at 986.459 kb on + strand, within Pf6N2E2_841at 986.459 kb on + strand, within Pf6N2E2_841at 986.460 kb on - strand, within Pf6N2E2_841at 986.491 kb on + strandat 986.491 kb on + strandat 986.491 kb on + strandat 986.491 kb on + strandat 986.505 kb on + strandat 986.505 kb on + strandat 986.505 kb on + strandat 986.505 kb on + strandat 986.506 kb on - strandat 986.594 kb on + strandat 986.594 kb on + strandat 986.598 kb on + strandat 986.599 kb on - strandat 986.599 kb on - strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.736 kb on - strandat 986.737 kb on + strandat 986.737 kb on + strandat 986.774 kb on - strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.780 kb on - strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.841 kb on + strandat 986.841 kb on + strandat 986.842 kb on - strandat 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.007 kb on - strand, within Pf6N2E2_842at 987.102 kb on + strand, within Pf6N2E2_842at 987.103 kb on - strand, within Pf6N2E2_842at 987.222 kb on - strand, within Pf6N2E2_842at 987.328 kb on - strand, within Pf6N2E2_842at 987.348 kb on + strand, within Pf6N2E2_842at 987.348 kb on + strand, within Pf6N2E2_842at 987.349 kb on - strand, within Pf6N2E2_842at 987.349 kb on - strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.478 kb on - strand, within Pf6N2E2_842

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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985,461 + Pf6N2E2_840 0.13 +0.8
985,461 + Pf6N2E2_840 0.13 +0.8
985,461 + Pf6N2E2_840 0.13 +0.8
985,461 + Pf6N2E2_840 0.13 +0.8
985,462 - Pf6N2E2_840 0.13 -1.3
985,462 - Pf6N2E2_840 0.13 +0.8
985,462 - Pf6N2E2_840 0.13 -0.2
985,462 - Pf6N2E2_840 0.13 -1.5
985,669 + Pf6N2E2_840 0.34 +0.8
985,684 + Pf6N2E2_840 0.35 +0.8
985,684 + Pf6N2E2_840 0.35 -0.8
985,685 - Pf6N2E2_840 0.35 +0.8
985,725 + Pf6N2E2_840 0.40 -1.5
985,882 + Pf6N2E2_840 0.55 +0.8
985,882 + Pf6N2E2_840 0.55 -2.0
985,882 + Pf6N2E2_840 0.55 -0.8
985,883 - Pf6N2E2_840 0.56 -1.0
986,459 + Pf6N2E2_841 0.78 -2.5
986,459 + Pf6N2E2_841 0.78 -0.2
986,460 - Pf6N2E2_841 0.79 +0.8
986,491 + +0.8
986,491 + -1.2
986,491 + -0.2
986,491 + +0.8
986,505 + -1.5
986,505 + +0.8
986,505 + +0.8
986,505 + +0.3
986,506 - -0.2
986,594 + +0.8
986,594 + -1.2
986,598 + +0.8
986,599 - -1.3
986,599 - -1.6
986,735 + -0.2
986,735 + +0.8
986,735 + -1.4
986,735 + -1.6
986,735 + +0.8
986,736 - +0.8
986,737 + +0.8
986,737 + -1.1
986,774 - -0.2
986,779 + +0.8
986,779 + +0.8
986,779 + +0.8
986,779 + +0.8
986,780 - -0.6
986,837 + -0.2
986,837 + +0.8
986,837 + +0.8
986,837 + +0.8
986,838 - +0.8
986,838 - -1.7
986,838 - +0.8
986,838 - +0.8
986,841 + -1.5
986,841 + -0.2
986,842 - -0.2
987,006 + Pf6N2E2_842 0.21 -0.2
987,006 + Pf6N2E2_842 0.21 +0.8
987,006 + Pf6N2E2_842 0.21 -1.2
987,006 + Pf6N2E2_842 0.21 +0.8
987,007 - Pf6N2E2_842 0.21 +0.8
987,102 + Pf6N2E2_842 0.34 -1.2
987,103 - Pf6N2E2_842 0.34 -2.3
987,222 - Pf6N2E2_842 0.51 +0.8
987,328 - Pf6N2E2_842 0.66 +0.8
987,348 + Pf6N2E2_842 0.69 -1.8
987,348 + Pf6N2E2_842 0.69 -0.8
987,349 - Pf6N2E2_842 0.69 -0.8
987,349 - Pf6N2E2_842 0.69 -0.7
987,456 + Pf6N2E2_842 0.84 -0.8
987,456 + Pf6N2E2_842 0.84 -3.1
987,456 + Pf6N2E2_842 0.84 -1.8
987,457 - Pf6N2E2_842 0.84 -0.2
987,457 - Pf6N2E2_842 0.84 -0.2
987,457 - Pf6N2E2_842 0.84 +0.8
987,478 - Pf6N2E2_842 0.87 -1.5

Or see this region's nucleotide sequence