Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_806 and Pf6N2E2_807 are separated by 15 nucleotides Pf6N2E2_807 and Pf6N2E2_808 are separated by 39 nucleotides Pf6N2E2_808 and Pf6N2E2_809 are separated by 10 nucleotides
Pf6N2E2_806 - Multiple polyol-specific dehydrogenase (EC 1.1.1.-), at 937,682 to 939,163
_806
Pf6N2E2_807 - Various polyols ABC transporter, ATP-binding component, at 939,179 to 940,282
_807
Pf6N2E2_808 - Various polyols ABC transporter, permease component 2, at 940,322 to 941,152
_808
Pf6N2E2_809 - Various polyols ABC transporter, permease component 1, at 941,163 to 942,098
_809
Position (kb) 939
940
941 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 938.293 kb on - strand, within Pf6N2E2_806 at 938.293 kb on - strand, within Pf6N2E2_806 at 938.907 kb on + strand, within Pf6N2E2_806 at 938.922 kb on + strand, within Pf6N2E2_806 at 938.923 kb on - strand, within Pf6N2E2_806 at 939.030 kb on + strand at 939.030 kb on + strand at 939.030 kb on + strand at 939.031 kb on - strand at 939.031 kb on - strand at 939.033 kb on + strand at 939.034 kb on - strand at 939.119 kb on + strand at 939.119 kb on + strand at 939.119 kb on + strand at 939.177 kb on - strand at 939.230 kb on + strand at 939.230 kb on + strand at 939.231 kb on - strand at 939.619 kb on - strand, within Pf6N2E2_807 at 939.717 kb on + strand, within Pf6N2E2_807 at 939.717 kb on + strand, within Pf6N2E2_807 at 939.717 kb on + strand, within Pf6N2E2_807 at 939.717 kb on + strand, within Pf6N2E2_807 at 939.717 kb on + strand, within Pf6N2E2_807 at 939.717 kb on + strand, within Pf6N2E2_807 at 939.717 kb on + strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.718 kb on - strand, within Pf6N2E2_807 at 939.858 kb on - strand, within Pf6N2E2_807 at 940.023 kb on + strand, within Pf6N2E2_807 at 940.024 kb on - strand, within Pf6N2E2_807 at 940.032 kb on + strand, within Pf6N2E2_807 at 940.032 kb on + strand, within Pf6N2E2_807 at 940.032 kb on + strand, within Pf6N2E2_807 at 940.032 kb on + strand, within Pf6N2E2_807 at 940.032 kb on + strand, within Pf6N2E2_807 at 940.032 kb on + strand, within Pf6N2E2_807 at 940.033 kb on - strand, within Pf6N2E2_807 at 940.033 kb on - strand, within Pf6N2E2_807 at 940.033 kb on - strand, within Pf6N2E2_807 at 940.306 kb on + strand at 940.306 kb on + strand at 940.314 kb on - strand at 940.324 kb on - strand at 940.455 kb on + strand, within Pf6N2E2_808 at 940.455 kb on + strand, within Pf6N2E2_808 at 940.455 kb on + strand, within Pf6N2E2_808 at 940.590 kb on - strand, within Pf6N2E2_808 at 940.590 kb on - strand, within Pf6N2E2_808 at 940.610 kb on + strand, within Pf6N2E2_808 at 940.611 kb on - strand, within Pf6N2E2_808 at 940.668 kb on + strand, within Pf6N2E2_808 at 940.669 kb on - strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.674 kb on + strand, within Pf6N2E2_808 at 940.675 kb on - strand, within Pf6N2E2_808 at 940.675 kb on - strand, within Pf6N2E2_808 at 940.713 kb on + strand, within Pf6N2E2_808 at 940.713 kb on + strand, within Pf6N2E2_808 at 940.717 kb on + strand, within Pf6N2E2_808 at 940.717 kb on + strand, within Pf6N2E2_808 at 940.770 kb on + strand, within Pf6N2E2_808 at 940.771 kb on - strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.831 kb on + strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.832 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.951 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808 at 940.978 kb on - strand, within Pf6N2E2_808
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 938,293 - Pf6N2E2_806 0.41 +0.8 938,293 - Pf6N2E2_806 0.41 +0.8 938,907 + Pf6N2E2_806 0.83 -0.2 938,922 + Pf6N2E2_806 0.84 -0.2 938,923 - Pf6N2E2_806 0.84 -2.2 939,030 + -3.9 939,030 + -2.0 939,030 + -1.6 939,031 - -0.8 939,031 - -0.8 939,033 + -1.6 939,034 - +0.8 939,119 + +0.8 939,119 + -2.8 939,119 + -0.2 939,177 - -0.2 939,230 + -0.2 939,230 + -0.2 939,231 - +0.8 939,619 - Pf6N2E2_807 0.40 -2.7 939,717 + Pf6N2E2_807 0.49 -0.2 939,717 + Pf6N2E2_807 0.49 +2.6 939,717 + Pf6N2E2_807 0.49 -0.2 939,717 + Pf6N2E2_807 0.49 +0.8 939,717 + Pf6N2E2_807 0.49 -0.2 939,717 + Pf6N2E2_807 0.49 +0.8 939,717 + Pf6N2E2_807 0.49 +0.8 939,718 - Pf6N2E2_807 0.49 -2.8 939,718 - Pf6N2E2_807 0.49 +0.8 939,718 - Pf6N2E2_807 0.49 +0.8 939,718 - Pf6N2E2_807 0.49 +0.8 939,718 - Pf6N2E2_807 0.49 -0.2 939,718 - Pf6N2E2_807 0.49 -2.4 939,718 - Pf6N2E2_807 0.49 +0.8 939,718 - Pf6N2E2_807 0.49 +0.8 939,718 - Pf6N2E2_807 0.49 +0.8 939,858 - Pf6N2E2_807 0.62 +0.8 940,023 + Pf6N2E2_807 0.76 +2.1 940,024 - Pf6N2E2_807 0.77 -0.2 940,032 + Pf6N2E2_807 0.77 +2.5 940,032 + Pf6N2E2_807 0.77 +2.3 940,032 + Pf6N2E2_807 0.77 +1.6 940,032 + Pf6N2E2_807 0.77 +0.8 940,032 + Pf6N2E2_807 0.77 -0.2 940,032 + Pf6N2E2_807 0.77 +0.8 940,033 - Pf6N2E2_807 0.77 -1.6 940,033 - Pf6N2E2_807 0.77 +0.8 940,033 - Pf6N2E2_807 0.77 -1.3 940,306 + +0.8 940,306 + -0.2 940,314 - -1.5 940,324 - -0.2 940,455 + Pf6N2E2_808 0.16 -2.2 940,455 + Pf6N2E2_808 0.16 -1.5 940,455 + Pf6N2E2_808 0.16 -0.2 940,590 - Pf6N2E2_808 0.32 -1.4 940,590 - Pf6N2E2_808 0.32 -2.6 940,610 + Pf6N2E2_808 0.35 +0.8 940,611 - Pf6N2E2_808 0.35 -2.0 940,668 + Pf6N2E2_808 0.42 -1.6 940,669 - Pf6N2E2_808 0.42 -0.2 940,674 + Pf6N2E2_808 0.42 +0.8 940,674 + Pf6N2E2_808 0.42 -2.0 940,674 + Pf6N2E2_808 0.42 +0.8 940,674 + Pf6N2E2_808 0.42 -0.2 940,674 + Pf6N2E2_808 0.42 +0.8 940,675 - Pf6N2E2_808 0.42 -2.1 940,675 - Pf6N2E2_808 0.42 -0.2 940,713 + Pf6N2E2_808 0.47 -0.8 940,713 + Pf6N2E2_808 0.47 +0.8 940,717 + Pf6N2E2_808 0.48 +0.8 940,717 + Pf6N2E2_808 0.48 +0.8 940,770 + Pf6N2E2_808 0.54 +0.8 940,771 - Pf6N2E2_808 0.54 +0.8 940,831 + Pf6N2E2_808 0.61 -1.2 940,831 + Pf6N2E2_808 0.61 -1.2 940,831 + Pf6N2E2_808 0.61 +0.8 940,831 + Pf6N2E2_808 0.61 +0.8 940,831 + Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 -0.8 940,832 - Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 +0.8 940,832 - Pf6N2E2_808 0.61 -0.2 940,832 - Pf6N2E2_808 0.61 -0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,951 - Pf6N2E2_808 0.76 +0.8 940,978 - Pf6N2E2_808 0.79 +0.8 940,978 - Pf6N2E2_808 0.79 -4.0 940,978 - Pf6N2E2_808 0.79 +0.2 940,978 - Pf6N2E2_808 0.79 +0.8 940,978 - Pf6N2E2_808 0.79 -1.5
Or see this region's nucleotide sequence