Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_733

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_731 and Pf6N2E2_732 overlap by 8 nucleotidesPf6N2E2_732 and Pf6N2E2_733 are separated by 10 nucleotidesPf6N2E2_733 and Pf6N2E2_734 are separated by 25 nucleotides Pf6N2E2_731 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 839,552 to 840,307 _731 Pf6N2E2_732 - Respiratory nitrate reductase gamma chain (EC 1.7.99.4), at 840,300 to 840,980 _732 Pf6N2E2_733 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 840,991 to 841,959 _733 Pf6N2E2_734 - Molybdenum cofactor biosynthesis protein MoaA, at 841,985 to 842,977 _734 Position (kb) 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1at 840.298 kb on + strandat 840.298 kb on + strandat 840.305 kb on + strandat 840.305 kb on + strandat 840.306 kb on - strandat 840.306 kb on - strandat 840.396 kb on + strand, within Pf6N2E2_732at 840.397 kb on - strand, within Pf6N2E2_732at 840.397 kb on - strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.740 kb on + strand, within Pf6N2E2_732at 840.852 kb on + strand, within Pf6N2E2_732at 840.852 kb on + strand, within Pf6N2E2_732at 840.853 kb on - strand, within Pf6N2E2_732at 840.940 kb on - strandat 840.940 kb on - strandat 841.246 kb on + strand, within Pf6N2E2_733at 841.247 kb on - strand, within Pf6N2E2_733at 841.454 kb on - strand, within Pf6N2E2_733at 841.454 kb on - strand, within Pf6N2E2_733at 841.454 kb on - strand, within Pf6N2E2_733at 841.882 kb on + strandat 842.073 kb on - strandat 842.517 kb on - strand, within Pf6N2E2_734at 842.684 kb on + strand, within Pf6N2E2_734at 842.684 kb on + strand, within Pf6N2E2_734at 842.684 kb on + strand, within Pf6N2E2_734at 842.685 kb on - strand, within Pf6N2E2_734

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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840,298 + -0.2
840,298 + -0.2
840,305 + +0.4
840,305 + +0.8
840,306 - +0.8
840,306 - +0.8
840,396 + Pf6N2E2_732 0.14 -1.6
840,397 - Pf6N2E2_732 0.14 -2.8
840,397 - Pf6N2E2_732 0.14 -0.8
840,528 + Pf6N2E2_732 0.33 +0.8
840,528 + Pf6N2E2_732 0.33 +0.8
840,528 + Pf6N2E2_732 0.33 +0.8
840,528 + Pf6N2E2_732 0.33 +0.8
840,528 + Pf6N2E2_732 0.33 -0.6
840,528 + Pf6N2E2_732 0.33 -0.2
840,528 + Pf6N2E2_732 0.33 +0.8
840,528 + Pf6N2E2_732 0.33 -0.8
840,529 - Pf6N2E2_732 0.34 -0.2
840,529 - Pf6N2E2_732 0.34 +0.8
840,529 - Pf6N2E2_732 0.34 -0.2
840,529 - Pf6N2E2_732 0.34 +0.8
840,529 - Pf6N2E2_732 0.34 -0.9
840,529 - Pf6N2E2_732 0.34 -1.2
840,740 + Pf6N2E2_732 0.65 -0.2
840,852 + Pf6N2E2_732 0.81 -0.2
840,852 + Pf6N2E2_732 0.81 +0.8
840,853 - Pf6N2E2_732 0.81 +0.8
840,940 - +0.8
840,940 - -0.2
841,246 + Pf6N2E2_733 0.26 -1.2
841,247 - Pf6N2E2_733 0.26 -0.2
841,454 - Pf6N2E2_733 0.48 -2.9
841,454 - Pf6N2E2_733 0.48 -0.8
841,454 - Pf6N2E2_733 0.48 -0.8
841,882 + -0.2
842,073 - -0.2
842,517 - Pf6N2E2_734 0.54 +0.8
842,684 + Pf6N2E2_734 0.70 -0.8
842,684 + Pf6N2E2_734 0.70 -0.8
842,684 + Pf6N2E2_734 0.70 +0.8
842,685 - Pf6N2E2_734 0.70 -0.2

Or see this region's nucleotide sequence