Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_576 and Pf6N2E2_577 are separated by 642 nucleotides Pf6N2E2_577 and Pf6N2E2_578 are separated by 61 nucleotides Pf6N2E2_578 and Pf6N2E2_579 overlap by 4 nucleotides
Pf6N2E2_576 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 650,468 to 651,430
_576
Pf6N2E2_577 - Mobile element protein, at 652,073 to 653,641
_577
Pf6N2E2_578 - Mobile element protein, at 653,703 to 654,038
_578
Pf6N2E2_579 - FIG00962753: hypothetical protein, at 654,035 to 654,229
_579
Position (kb) 652
653
654 Strain fitness (log2 ratio) -2
-1
0
1 at 651.157 kb on + strand, within Pf6N2E2_576 at 651.158 kb on - strand, within Pf6N2E2_576 at 651.308 kb on + strand, within Pf6N2E2_576 at 651.375 kb on + strand at 651.376 kb on - strand at 651.376 kb on - strand at 651.401 kb on + strand at 651.401 kb on + strand at 651.401 kb on + strand at 651.402 kb on - strand at 651.429 kb on - strand at 651.461 kb on + strand at 651.461 kb on + strand at 651.461 kb on + strand at 651.462 kb on - strand at 651.462 kb on - strand at 651.476 kb on + strand at 651.476 kb on + strand at 651.476 kb on + strand at 651.477 kb on - strand at 651.477 kb on - strand at 651.511 kb on + strand at 651.512 kb on - strand at 651.528 kb on - strand at 651.564 kb on - strand at 651.564 kb on - strand at 651.601 kb on + strand at 651.604 kb on - strand at 651.604 kb on - strand at 651.645 kb on - strand at 651.645 kb on - strand at 651.645 kb on - strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.711 kb on - strand at 651.711 kb on - strand at 651.782 kb on - strand at 651.824 kb on + strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.844 kb on + strand at 651.844 kb on + strand at 651.848 kb on + strand at 651.849 kb on - strand at 651.849 kb on - strand at 651.866 kb on + strand at 651.875 kb on + strand at 651.876 kb on - strand at 651.876 kb on - strand at 651.936 kb on + strand at 651.936 kb on + strand at 651.937 kb on - strand at 651.946 kb on + strand at 651.946 kb on + strand at 651.947 kb on - strand at 651.985 kb on + strand at 651.985 kb on + strand at 651.986 kb on - strand at 651.986 kb on - strand at 652.025 kb on - strand at 652.025 kb on - strand at 652.039 kb on + strand at 652.040 kb on - strand at 652.040 kb on - strand at 652.155 kb on - strand at 652.155 kb on - strand at 652.159 kb on - strand at 652.304 kb on - strand, within Pf6N2E2_577 at 652.304 kb on - strand, within Pf6N2E2_577 at 652.304 kb on - strand, within Pf6N2E2_577 at 652.368 kb on + strand, within Pf6N2E2_577 at 652.368 kb on + strand, within Pf6N2E2_577 at 652.369 kb on - strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.441 kb on + strand, within Pf6N2E2_577 at 652.506 kb on - strand, within Pf6N2E2_577 at 652.506 kb on - strand, within Pf6N2E2_577 at 652.524 kb on + strand, within Pf6N2E2_577 at 652.525 kb on - strand, within Pf6N2E2_577 at 652.540 kb on - strand, within Pf6N2E2_577 at 652.540 kb on - strand, within Pf6N2E2_577 at 652.540 kb on - strand, within Pf6N2E2_577 at 652.657 kb on - strand, within Pf6N2E2_577 at 652.679 kb on + strand, within Pf6N2E2_577 at 652.679 kb on + strand, within Pf6N2E2_577 at 652.679 kb on + strand, within Pf6N2E2_577 at 652.680 kb on - strand, within Pf6N2E2_577 at 652.785 kb on + strand, within Pf6N2E2_577 at 652.786 kb on - strand, within Pf6N2E2_577 at 652.786 kb on - strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.798 kb on - strand, within Pf6N2E2_577 at 652.798 kb on - strand, within Pf6N2E2_577 at 652.861 kb on + strand, within Pf6N2E2_577 at 653.046 kb on - strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.259 kb on - strand, within Pf6N2E2_577 at 653.459 kb on + strand at 653.460 kb on - strand, within Pf6N2E2_577 at 653.573 kb on + strand at 653.574 kb on - strand at 653.588 kb on + strand at 653.611 kb on + strand at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 654.053 kb on + strand at 654.054 kb on - strand at 654.178 kb on + strand, within Pf6N2E2_579 at 654.179 kb on - strand, within Pf6N2E2_579 at 654.381 kb on - strand at 654.388 kb on + strand at 654.388 kb on + strand at 654.447 kb on + strand at 654.468 kb on + strand at 654.469 kb on - strand at 654.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 651,157 + Pf6N2E2_576 0.72 -2.3 651,158 - Pf6N2E2_576 0.72 -0.7 651,308 + Pf6N2E2_576 0.87 -2.4 651,375 + -0.1 651,376 - +0.9 651,376 - +0.9 651,401 + -0.1 651,401 + -0.1 651,401 + -0.1 651,402 - -0.7 651,429 - -1.1 651,461 + +0.9 651,461 + -1.1 651,461 + -1.1 651,462 - +0.9 651,462 - -0.1 651,476 + -0.3 651,476 + -1.2 651,476 + -0.5 651,477 - -0.1 651,477 - +0.9 651,511 + +0.9 651,512 - -0.7 651,528 - +0.9 651,564 - +0.9 651,564 - -0.5 651,601 + +0.9 651,604 - +0.9 651,604 - -1.1 651,645 - -1.5 651,645 - +0.9 651,645 - +0.9 651,708 + +0.9 651,708 + -1.9 651,708 + +0.9 651,708 + +0.9 651,711 - +0.9 651,711 - +0.9 651,782 - -0.1 651,824 + +0.9 651,840 - +0.9 651,840 - -1.9 651,840 - -0.7 651,840 - +0.3 651,844 + +0.9 651,844 + +0.9 651,848 + +0.9 651,849 - +0.9 651,849 - -1.9 651,866 + +0.9 651,875 + -0.1 651,876 - -1.1 651,876 - +0.9 651,936 + +0.9 651,936 + +0.9 651,937 - +0.9 651,946 + -0.1 651,946 + +0.9 651,947 - -0.1 651,985 + -1.7 651,985 + +0.9 651,986 - +0.9 651,986 - +0.9 652,025 - -0.1 652,025 - -1.7 652,039 + -1.6 652,040 - -0.1 652,040 - -1.2 652,155 - +0.9 652,155 - +0.9 652,159 - -0.2 652,304 - Pf6N2E2_577 0.15 +0.3 652,304 - Pf6N2E2_577 0.15 +0.9 652,304 - Pf6N2E2_577 0.15 +0.9 652,368 + Pf6N2E2_577 0.19 +0.9 652,368 + Pf6N2E2_577 0.19 +0.9 652,369 - Pf6N2E2_577 0.19 +0.9 652,436 + Pf6N2E2_577 0.23 -0.1 652,436 + Pf6N2E2_577 0.23 -1.5 652,436 + Pf6N2E2_577 0.23 +0.9 652,436 + Pf6N2E2_577 0.23 +0.9 652,437 - Pf6N2E2_577 0.23 +0.9 652,437 - Pf6N2E2_577 0.23 -1.8 652,437 - Pf6N2E2_577 0.23 +0.3 652,437 - Pf6N2E2_577 0.23 -1.2 652,437 - Pf6N2E2_577 0.23 -0.1 652,437 - Pf6N2E2_577 0.23 +0.9 652,437 - Pf6N2E2_577 0.23 +0.9 652,437 - Pf6N2E2_577 0.23 +0.9 652,437 - Pf6N2E2_577 0.23 +0.9 652,437 - Pf6N2E2_577 0.23 +0.9 652,441 + Pf6N2E2_577 0.23 +0.9 652,506 - Pf6N2E2_577 0.28 -1.8 652,506 - Pf6N2E2_577 0.28 +0.9 652,524 + Pf6N2E2_577 0.29 +0.9 652,525 - Pf6N2E2_577 0.29 -0.1 652,540 - Pf6N2E2_577 0.30 -0.1 652,540 - Pf6N2E2_577 0.30 +0.9 652,540 - Pf6N2E2_577 0.30 +0.9 652,657 - Pf6N2E2_577 0.37 +0.9 652,679 + Pf6N2E2_577 0.39 -0.9 652,679 + Pf6N2E2_577 0.39 +0.9 652,679 + Pf6N2E2_577 0.39 -0.1 652,680 - Pf6N2E2_577 0.39 -0.1 652,785 + Pf6N2E2_577 0.45 +0.9 652,786 - Pf6N2E2_577 0.45 -0.1 652,786 - Pf6N2E2_577 0.45 -0.1 652,797 + Pf6N2E2_577 0.46 -0.1 652,797 + Pf6N2E2_577 0.46 +0.9 652,797 + Pf6N2E2_577 0.46 -0.1 652,798 - Pf6N2E2_577 0.46 +0.9 652,798 - Pf6N2E2_577 0.46 -0.1 652,861 + Pf6N2E2_577 0.50 -0.7 653,046 - Pf6N2E2_577 0.62 -1.5 653,172 + Pf6N2E2_577 0.70 +0.9 653,172 + Pf6N2E2_577 0.70 +0.9 653,173 - Pf6N2E2_577 0.70 -0.7 653,173 - Pf6N2E2_577 0.70 -0.1 653,173 - Pf6N2E2_577 0.70 -1.2 653,259 - Pf6N2E2_577 0.76 +0.9 653,459 + +0.9 653,460 - Pf6N2E2_577 0.88 +0.9 653,573 + -2.3 653,574 - +0.9 653,588 + +0.9 653,611 + +0.9 653,920 + Pf6N2E2_578 0.65 -0.7 653,920 + Pf6N2E2_578 0.65 +0.9 653,920 + Pf6N2E2_578 0.65 +0.9 653,920 + Pf6N2E2_578 0.65 -2.0 653,920 + Pf6N2E2_578 0.65 +0.9 653,920 + Pf6N2E2_578 0.65 -0.1 653,921 - Pf6N2E2_578 0.65 -2.2 653,921 - Pf6N2E2_578 0.65 +0.9 654,053 + +0.9 654,054 - +0.9 654,178 + Pf6N2E2_579 0.73 +0.9 654,179 - Pf6N2E2_579 0.74 +0.9 654,381 - +0.9 654,388 + -0.1 654,388 + -0.1 654,447 + -0.1 654,468 + -1.9 654,469 - +0.9 654,469 - -0.1
Or see this region's nucleotide sequence