Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_542 and Pf6N2E2_543 are separated by 450 nucleotides Pf6N2E2_543 and Pf6N2E2_544 are separated by 153 nucleotides Pf6N2E2_544 and Pf6N2E2_545 are separated by 24 nucleotides
Pf6N2E2_542 - hypothetical protein, at 610,330 to 611,763
_542
Pf6N2E2_543 - Myo-inositol 2-dehydrogenase (EC 1.1.1.18), at 612,214 to 613,329
_543
Pf6N2E2_544 - Short-chain dehydrogenase/reductase SDR, at 613,483 to 614,250
_544
Pf6N2E2_545 - Predicted aminoglycoside phosphotransferase, at 614,275 to 615,342
_545
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 611.282 kb on + strand, within Pf6N2E2_542 at 611.282 kb on + strand, within Pf6N2E2_542 at 611.282 kb on + strand, within Pf6N2E2_542 at 611.282 kb on + strand, within Pf6N2E2_542 at 611.282 kb on + strand, within Pf6N2E2_542 at 611.282 kb on + strand, within Pf6N2E2_542 at 611.283 kb on - strand, within Pf6N2E2_542 at 611.283 kb on - strand, within Pf6N2E2_542 at 611.283 kb on - strand, within Pf6N2E2_542 at 611.283 kb on - strand, within Pf6N2E2_542 at 611.504 kb on - strand, within Pf6N2E2_542 at 611.811 kb on + strand at 611.811 kb on + strand at 612.215 kb on + strand at 612.216 kb on - strand at 612.217 kb on + strand at 612.217 kb on + strand at 612.217 kb on + strand at 612.217 kb on + strand at 612.217 kb on + strand at 612.217 kb on + strand at 612.217 kb on + strand at 612.217 kb on + strand at 612.218 kb on - strand at 612.218 kb on - strand at 612.218 kb on - strand at 612.218 kb on - strand at 612.218 kb on - strand at 612.218 kb on - strand at 612.378 kb on - strand, within Pf6N2E2_543 at 612.378 kb on - strand, within Pf6N2E2_543 at 612.648 kb on + strand, within Pf6N2E2_543 at 612.648 kb on + strand, within Pf6N2E2_543 at 612.648 kb on + strand, within Pf6N2E2_543 at 612.648 kb on + strand, within Pf6N2E2_543 at 612.648 kb on + strand, within Pf6N2E2_543 at 612.648 kb on + strand, within Pf6N2E2_543 at 612.648 kb on + strand, within Pf6N2E2_543 at 612.649 kb on - strand, within Pf6N2E2_543 at 612.649 kb on - strand, within Pf6N2E2_543 at 612.649 kb on - strand, within Pf6N2E2_543 at 612.935 kb on + strand, within Pf6N2E2_543 at 612.935 kb on + strand, within Pf6N2E2_543 at 612.936 kb on - strand, within Pf6N2E2_543 at 612.936 kb on - strand, within Pf6N2E2_543 at 612.936 kb on - strand, within Pf6N2E2_543 at 612.941 kb on + strand, within Pf6N2E2_543 at 612.941 kb on + strand, within Pf6N2E2_543 at 612.942 kb on - strand, within Pf6N2E2_543 at 613.031 kb on + strand, within Pf6N2E2_543 at 613.032 kb on - strand, within Pf6N2E2_543 at 613.444 kb on + strand at 613.444 kb on + strand at 613.445 kb on - strand at 613.445 kb on - strand at 613.445 kb on - strand at 613.445 kb on - strand at 613.445 kb on - strand at 613.445 kb on - strand at 613.529 kb on + strand at 613.529 kb on + strand at 613.553 kb on + strand at 613.553 kb on + strand at 613.554 kb on - strand at 613.769 kb on + strand, within Pf6N2E2_544 at 613.769 kb on + strand, within Pf6N2E2_544 at 613.769 kb on + strand, within Pf6N2E2_544 at 613.770 kb on - strand, within Pf6N2E2_544 at 613.773 kb on + strand, within Pf6N2E2_544 at 613.774 kb on - strand, within Pf6N2E2_544 at 614.266 kb on + strand at 614.266 kb on + strand at 614.266 kb on + strand at 614.266 kb on + strand at 614.266 kb on + strand at 614.266 kb on + strand at 614.266 kb on + strand at 614.267 kb on - strand at 614.267 kb on - strand at 614.267 kb on - strand at 614.267 kb on - strand at 614.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 611,282 + Pf6N2E2_542 0.66 -0.1 611,282 + Pf6N2E2_542 0.66 -0.7 611,282 + Pf6N2E2_542 0.66 -1.8 611,282 + Pf6N2E2_542 0.66 -1.1 611,282 + Pf6N2E2_542 0.66 +0.9 611,282 + Pf6N2E2_542 0.66 -0.1 611,283 - Pf6N2E2_542 0.66 -2.8 611,283 - Pf6N2E2_542 0.66 -2.0 611,283 - Pf6N2E2_542 0.66 -0.1 611,283 - Pf6N2E2_542 0.66 -1.1 611,504 - Pf6N2E2_542 0.82 +0.9 611,811 + +0.9 611,811 + -0.7 612,215 + +0.9 612,216 - -0.9 612,217 + -2.8 612,217 + -1.7 612,217 + +0.9 612,217 + +0.9 612,217 + -1.2 612,217 + -1.7 612,217 + +0.9 612,217 + -1.1 612,218 - -0.8 612,218 - -1.4 612,218 - -0.1 612,218 - -1.0 612,218 - +0.9 612,218 - -0.4 612,378 - Pf6N2E2_543 0.15 +0.9 612,378 - Pf6N2E2_543 0.15 +0.9 612,648 + Pf6N2E2_543 0.39 +0.9 612,648 + Pf6N2E2_543 0.39 +0.9 612,648 + Pf6N2E2_543 0.39 -1.1 612,648 + Pf6N2E2_543 0.39 +0.9 612,648 + Pf6N2E2_543 0.39 -2.4 612,648 + Pf6N2E2_543 0.39 -0.4 612,648 + Pf6N2E2_543 0.39 +0.9 612,649 - Pf6N2E2_543 0.39 +0.9 612,649 - Pf6N2E2_543 0.39 -0.1 612,649 - Pf6N2E2_543 0.39 +0.9 612,935 + Pf6N2E2_543 0.65 -2.7 612,935 + Pf6N2E2_543 0.65 -1.8 612,936 - Pf6N2E2_543 0.65 +0.9 612,936 - Pf6N2E2_543 0.65 +0.9 612,936 - Pf6N2E2_543 0.65 +0.9 612,941 + Pf6N2E2_543 0.65 -0.1 612,941 + Pf6N2E2_543 0.65 -0.1 612,942 - Pf6N2E2_543 0.65 -1.1 613,031 + Pf6N2E2_543 0.73 +0.9 613,032 - Pf6N2E2_543 0.73 +0.9 613,444 + +0.9 613,444 + -0.1 613,445 - -1.6 613,445 - +0.9 613,445 - +0.3 613,445 - +0.9 613,445 - -0.1 613,445 - -2.0 613,529 + -0.1 613,529 + -0.1 613,553 + +0.9 613,553 + +0.9 613,554 - -0.1 613,769 + Pf6N2E2_544 0.37 +0.9 613,769 + Pf6N2E2_544 0.37 -0.1 613,769 + Pf6N2E2_544 0.37 +0.9 613,770 - Pf6N2E2_544 0.37 +0.9 613,773 + Pf6N2E2_544 0.38 +0.9 613,774 - Pf6N2E2_544 0.38 +0.9 614,266 + -2.5 614,266 + -1.8 614,266 + -1.7 614,266 + -0.7 614,266 + -2.1 614,266 + -1.5 614,266 + +0.9 614,267 - +0.9 614,267 - -2.7 614,267 - +0.9 614,267 - -1.4 614,267 - -0.1
Or see this region's nucleotide sequence