Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_459

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_458 and Pf6N2E2_459 are separated by 174 nucleotidesPf6N2E2_459 and Pf6N2E2_460 are separated by 262 nucleotides Pf6N2E2_458 - Protein rarD, at 521,873 to 522,757 _458 Pf6N2E2_459 - Oxidoreductase, aldo/keto reductase family, at 522,932 to 523,945 _459 Pf6N2E2_460 - Glycerate kinase (EC 2.7.1.31), at 524,208 to 525,344 _460 Position (kb) 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1at 521.952 kb on + strandat 521.952 kb on + strandat 521.952 kb on + strandat 521.952 kb on + strandat 521.953 kb on - strandat 521.953 kb on - strandat 521.953 kb on - strandat 522.027 kb on + strand, within Pf6N2E2_458at 522.027 kb on + strand, within Pf6N2E2_458at 522.027 kb on + strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.078 kb on + strand, within Pf6N2E2_458at 522.079 kb on - strand, within Pf6N2E2_458at 522.079 kb on - strand, within Pf6N2E2_458at 522.142 kb on - strand, within Pf6N2E2_458at 522.270 kb on + strand, within Pf6N2E2_458at 522.270 kb on + strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.328 kb on - strand, within Pf6N2E2_458at 522.328 kb on - strand, within Pf6N2E2_458at 522.381 kb on + strand, within Pf6N2E2_458at 522.382 kb on - strand, within Pf6N2E2_458at 522.382 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.468 kb on + strand, within Pf6N2E2_458at 522.469 kb on - strand, within Pf6N2E2_458at 522.530 kb on + strand, within Pf6N2E2_458at 522.531 kb on - strand, within Pf6N2E2_458at 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.700 kb on - strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.761 kb on + strandat 522.762 kb on - strandat 522.762 kb on - strandat 522.782 kb on + strandat 522.782 kb on + strandat 522.783 kb on - strandat 522.783 kb on - strandat 522.783 kb on - strandat 522.807 kb on + strandat 522.807 kb on + strandat 522.895 kb on + strandat 522.933 kb on + strandat 522.933 kb on + strandat 522.933 kb on + strandat 522.934 kb on - strandat 522.934 kb on - strandat 522.934 kb on - strandat 523.072 kb on - strand, within Pf6N2E2_459at 523.072 kb on - strand, within Pf6N2E2_459at 523.185 kb on + strand, within Pf6N2E2_459at 523.185 kb on + strand, within Pf6N2E2_459at 523.356 kb on + strand, within Pf6N2E2_459at 523.356 kb on + strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.492 kb on - strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strandat 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.608 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.653 kb on - strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.939 kb on - strandat 524.103 kb on + strandat 524.104 kb on - strandat 524.204 kb on + strandat 524.204 kb on + strandat 524.205 kb on - strandat 524.205 kb on - strandat 524.207 kb on + strandat 524.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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521,952 + -1.7
521,952 + -1.7
521,952 + +0.9
521,952 + -2.8
521,953 - -1.4
521,953 - -0.9
521,953 - +0.9
522,027 + Pf6N2E2_458 0.17 +0.9
522,027 + Pf6N2E2_458 0.17 -1.1
522,027 + Pf6N2E2_458 0.17 -0.1
522,028 - Pf6N2E2_458 0.18 -0.1
522,028 - Pf6N2E2_458 0.18 +0.9
522,028 - Pf6N2E2_458 0.18 +0.9
522,028 - Pf6N2E2_458 0.18 +1.3
522,078 + Pf6N2E2_458 0.23 -0.1
522,079 - Pf6N2E2_458 0.23 -0.1
522,079 - Pf6N2E2_458 0.23 -1.8
522,142 - Pf6N2E2_458 0.30 -0.1
522,270 + Pf6N2E2_458 0.45 -0.1
522,270 + Pf6N2E2_458 0.45 +0.9
522,271 - Pf6N2E2_458 0.45 +0.9
522,271 - Pf6N2E2_458 0.45 -1.1
522,271 - Pf6N2E2_458 0.45 +0.9
522,271 - Pf6N2E2_458 0.45 -0.1
522,328 - Pf6N2E2_458 0.51 -0.6
522,328 - Pf6N2E2_458 0.51 +0.1
522,381 + Pf6N2E2_458 0.57 -1.7
522,382 - Pf6N2E2_458 0.58 +0.9
522,382 - Pf6N2E2_458 0.58 +0.9
522,400 - Pf6N2E2_458 0.60 -0.1
522,400 - Pf6N2E2_458 0.60 +0.9
522,400 - Pf6N2E2_458 0.60 -1.9
522,468 + Pf6N2E2_458 0.67 -2.3
522,469 - Pf6N2E2_458 0.67 +0.9
522,530 + Pf6N2E2_458 0.74 +0.9
522,531 - Pf6N2E2_458 0.74 +0.9
522,696 + -0.1
522,696 + +0.9
522,696 + -0.7
522,696 + -1.6
522,696 + -0.9
522,696 + -0.8
522,696 + -0.1
522,696 + -1.7
522,697 - +0.9
522,697 - +0.9
522,697 - +0.9
522,697 - +0.9
522,697 - -2.1
522,697 - +0.9
522,699 + +0.9
522,699 + -2.2
522,699 + -2.0
522,699 + -2.2
522,700 - +0.9
522,702 + +0.9
522,702 + -0.8
522,702 + +0.9
522,702 + +0.9
522,703 - -3.3
522,703 - +0.9
522,703 - +0.9
522,703 - -1.5
522,703 - +0.9
522,761 + -1.1
522,762 - +0.9
522,762 - +0.4
522,782 + +0.9
522,782 + -1.3
522,783 - -0.9
522,783 - -0.1
522,783 - +0.9
522,807 + -3.0
522,807 + -2.4
522,895 + -1.0
522,933 + -1.7
522,933 + +0.9
522,933 + -0.1
522,934 - +0.9
522,934 - -2.0
522,934 - +0.9
523,072 - Pf6N2E2_459 0.14 +0.9
523,072 - Pf6N2E2_459 0.14 -1.5
523,185 + Pf6N2E2_459 0.25 -2.1
523,185 + Pf6N2E2_459 0.25 -1.9
523,356 + Pf6N2E2_459 0.42 +0.9
523,356 + Pf6N2E2_459 0.42 -0.1
523,357 - Pf6N2E2_459 0.42 +0.9
523,357 - Pf6N2E2_459 0.42 -1.5
523,357 - Pf6N2E2_459 0.42 +0.9
523,411 - Pf6N2E2_459 0.47 -1.1
523,411 - Pf6N2E2_459 0.47 -0.1
523,411 - Pf6N2E2_459 0.47 -1.7
523,411 - Pf6N2E2_459 0.47 +0.9
523,411 - Pf6N2E2_459 0.47 +0.9
523,492 - Pf6N2E2_459 0.55 -0.1
523,593 + Pf6N2E2_459 0.65 +0.9
523,593 + Pf6N2E2_459 0.65 +0.9
523,594 - Pf6N2E2_459 0.65 -0.1
523,594 - Pf6N2E2_459 0.65 +0.9
523,594 - +0.9
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 -1.5
523,596 + Pf6N2E2_459 0.65 -0.7
523,596 + Pf6N2E2_459 0.65 -0.1
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 -0.7
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 -0.1
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 -1.6
523,597 - Pf6N2E2_459 0.66 +0.9
523,597 - Pf6N2E2_459 0.66 +0.9
523,597 - Pf6N2E2_459 0.66 +0.9
523,597 - Pf6N2E2_459 0.66 +0.3
523,597 - Pf6N2E2_459 0.66 +0.9
523,597 - Pf6N2E2_459 0.66 +0.9
523,597 - Pf6N2E2_459 0.66 +0.3
523,597 - Pf6N2E2_459 0.66 -0.8
523,597 - Pf6N2E2_459 0.66 +0.9
523,597 - Pf6N2E2_459 0.66 -0.1
523,597 - Pf6N2E2_459 0.66 +0.9
523,608 + Pf6N2E2_459 0.67 +0.9
523,652 + Pf6N2E2_459 0.71 +0.9
523,652 + Pf6N2E2_459 0.71 -0.1
523,652 + Pf6N2E2_459 0.71 -0.1
523,652 + Pf6N2E2_459 0.71 -1.9
523,652 + Pf6N2E2_459 0.71 +0.9
523,653 - Pf6N2E2_459 0.71 +0.9
523,788 + Pf6N2E2_459 0.84 +0.9
523,788 + Pf6N2E2_459 0.84 -0.5
523,788 + Pf6N2E2_459 0.84 -1.4
523,939 - +0.9
524,103 + +0.9
524,104 - -1.7
524,204 + +0.9
524,204 + -0.1
524,205 - +0.9
524,205 - -1.5
524,207 + +0.9
524,207 + -0.6

Or see this region's nucleotide sequence